• KELLEY

  • Referenced in 592 articles [sw04829]
  • reader!) and understand.’ par This book is partitioned into two parts. The first part, occupying ... devoted to the optimization of smooth functions. The methods studied in this first part rely...
  • MISER3

  • Referenced in 81 articles [sw04190]
  • constant or piecewise linear (continuous) functions defined on suitable partitions of the time interval...
  • rpart

  • Referenced in 117 articles [sw07115]
  • partitioning for classification, regression and survival trees. An implementation of most of the functionality...
  • ViennaRNA

  • Referenced in 20 articles [sw10504]
  • through energy minimization is the most used function in the package. We provide three kinds ... yields a single optimal structure, the partition function algorithm of (McCaskill 1990) which calculates base...
  • TANE

  • Referenced in 37 articles [sw02196]
  • finding functional dependencies from large databases. TANE is based on partitioning the set of rows ... values, which makes testing the validity of functional dependencies fast even for a large number ... partitions also makes the discovery of approximate functional dependencies easy and efficient and the erroneous...
  • ParMETIS

  • Referenced in 120 articles [sw04697]
  • that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill ... orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that ... parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes developed...
  • Essence

  • Referenced in 17 articles [sw27491]
  • such as tuples, sets, multisets, relations, partitions and functions. Essence also allows these combinatorial objects ... arbitrary depth, providing for example sets of partitions, sets of sets of partitions...
  • barvinok

  • Referenced in 11 articles [sw04868]
  • parametric polytopes. For parametric polytopes an explicit function in the shape of a piece-wise ... both Ehrhart quasi-polynomials and vector partition functions. Alternatively, a generalized Ehrhart series...
  • StanBij.mws

  • Referenced in 9 articles [sw06645]
  • Stanley In his paper, “On a partition function of Richard Stanley,” George Andrews proves...
  • DibaP

  • Referenced in 14 articles [sw08343]
  • multilevel algorithm for computing graph partitions. Graph partitioning requires the division of a graph ... some objective function is optimized. High-quality partitions are important for many applications, whose objective ... functions are often NPNP-hard to optimize. Most state-of-the-art graph partitioning libraries ... potential function, we develop a much faster method for the improvement of partitionings. This faster...
  • Probalign

  • Referenced in 6 articles [sw24613]
  • Probalign: multiple sequence alignment using partition function posterior probabilities. MOTIVATION: The maximum expected accuracy optimization ... residues to align sequences. The partition function methodology is one way of estimating these probabilities...
  • MUSCLE

  • Referenced in 70 articles [sw13193]
  • function we call the log‐expectation score, and refinement using tree‐dependent restricted partitioning...
  • party

  • Referenced in 25 articles [sw07330]
  • Recursive Partytioning. A computational toolbox for recursive partitioning. The core of the package is ctree ... random forests. The function mob() implements an algorithm for recursive partitioning based on parametric models ... parameter instability tests for split selection. Extensible functionality for visualizing tree-structured regression models...
  • UNAFold

  • Referenced in 8 articles [sw12671]
  • combines free energy minimization, partition function calculations and stochastic sampling. For melting simulations, the package...
  • TRIOPT

  • Referenced in 6 articles [sw02486]
  • simplices (partitions) obtained for re-partitioning. Function values at the vertices of each partition ... transformation function and their aggregate entropy is calculated. Based on this entropy, partitions that hold ... number of new function evaluations required per new partition. A novelty in the search scheme...
  • UbiCrawler

  • Referenced in 30 articles [sw13197]
  • very effective assignment function (based on consistent hashing) for partitioning the domain to crawl...
  • RNAfold

  • Referenced in 5 articles [sw10505]
  • minimum free energy secondary structures and partition function of RNAs. The program reads RNA sequences ... given it also computes the partition function (pf) and base pairing probability matrix, and prints...
  • MuPAD-Combinat

  • Referenced in 25 articles [sw04933]
  • package currently contains functions to deal with most usual combinatorial classes (partitions, tableaux, decomposable classes ... Hopf algebras like the algebra of symmetric functions and many generalizations. There is also some...
  • MSAProbs

  • Referenced in 3 articles [sw12007]
  • pair hidden Markov models and partition function posterior probabilities. Motivation: Multiple sequence alignment ... pair hidden Markov models and partition functions to calculate posterior probabilities. Furthermore, two critical bioinformatics...
  • partitions

  • Referenced in 4 articles [sw24296]
  • integer; the three corresponding partition functions are also given. Set partitions are now included...