• BVPh

  • Referenced in 171 articles [sw06575]
  • nonlinear problems, namely the homotopy analysis method (HAM). Unlike perturbation methods, the HAM has nothing...
  • NTRUSign

  • Referenced in 38 articles [sw11764]
  • carefully chosen perturbations to limit the information that is obtainable from an analysis...
  • TINKER

  • Referenced in 9 articles [sw04095]
  • with derivatives, simple free energy perturbation facility, normal mode analysis, minimization in Cartesian, torsional...
  • NERO

  • Referenced in 11 articles [sw01380]
  • resonant perturbative series through the program ARES, and on the analysis of the resonant orbits...
  • PeTTSy

  • Referenced in 1 article [sw32750]
  • PeTTSy: a computational tool for perturbation analysis of complex systems biology models. Conclusions: PeTTSy...
  • Zemax

  • Referenced in 2 articles [sw15108]
  • confirm consistency of various delivered models, perturbing the models and performing various analyses such ... purpose is to support modeling and analysis of perturbed and/or active optical systems in Zemax...
  • Ginsim

  • Referenced in 27 articles [sw09090]
  • approach is illustrated by a preliminary model analysis of the inter-cellular regulatory network activating ... outcome of various types of experimental perturbations, such as loss-of-function mutations or ectopically...
  • PointNet

  • Referenced in 18 articles [sw31209]
  • state of the art. Theoretically, we provide analysis towards understanding of what the network ... network is robust with respect to input perturbation and corruption...
  • figureone

  • Referenced in 1 article [sw32410]
  • time of each data collection, perturbations, and analysis performed. Graphical summaries can be useful...
  • GeneSPIDER

  • Referenced in 1 article [sw29318]
  • pipelines for the design of perturbation experiments, bootstrapping, analysis of linear dependence, sample selection, scaling...
  • AQUATOX

  • Referenced in 1 article [sw14781]
  • uncertainty analysis, nominal range sensitivity analysis, comparison of perturbed and control simulations, and graphing...
  • DDDAS

  • Referenced in 29 articles [sw18325]
  • improving modeling methods, and augmenting the analysis and prediction capabilities of application simulations ... modeling approaches and frameworks, algorithms tolerant to perturbations from dynamic data injection and steering...
  • joda

  • Referenced in 2 articles [sw20391]
  • Joint Deregulation Analysis (JODA). joda is an R package implementing the JODA algorithm introduced ... algorithm takes as input perturbation data of the same regulators in two different cell populations ... differential expression of the genes in the perturbation experiments. Here, the known TF targets ... examples of differential genes. The differential expression analysis is performed using our approach implemented...
  • TTCA

  • Referenced in 0 articles [sw15535]
  • here is specifically designed for the analysis of perturbation responses. It combines different scores ... extension of the method allows the analysis of the expression dynamics of functional groups...
  • constant_estimation

  • Referenced in 2 articles [sw29872]
  • addition, the quantitative analysis for the variation of eigenvalues upon the perturbation of the shape...
  • Shrinktech

  • Referenced in 4 articles [sw11890]
  • present a tool for the robustness analysis of timed automata that can check whether ... still present when the guards are perturbed. The perturbation model we consider is shrinking, which ... This can be used for 1) robustness analysis, and for 2) deriving implementations under imprecisions...
  • KEPLER

  • Referenced in 2 articles [sw08618]
  • that the fundamental frequencies of a slightly perturbed integrable Hamiltonian system are not time-constant ... evident from pendulum models and wavelet analysis. Exploiting an intrinsic imprecision inherent to the numerical ... frequency analysis algorithm itself, hence transforming a drawback into an opportunity, we define the Frequency ... product of two 2-spheres. The perturbation Hamiltonian, averaged over the mean anomaly, has surely...
  • CensRegMod

  • Referenced in 1 article [sw21092]
  • analysis of the sensitivity of the EM estimates under some usual perturbation schemes ... method is verified through the analysis of simulated data sets and modelling a real data...
  • Viriato

  • Referenced in 3 articles [sw22282]
  • means of a Hermite representation of the perturbed distribution function. A series of linear ... tests are presented, including a detailed analysis of 2D and 3D Orszag–Tang-type decaying...