• BIANCA

  • Referenced in 13 articles [sw02081]
  • composite laminates is a multi-population genetic algorithm capable to deal with unconstrained and constrained ... information, i.e., the structure of populations and individuals in BIANCA ... information is extensively exploited during genetic operations. Moreover, we developed proper and original strategies...
  • Mesquite

  • Referenced in 14 articles [sw09680]
  • some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Because...
  • ABCtoolbox

  • Referenced in 10 articles [sw08813]
  • different areas including genomics or population genetics...
  • IMPUTE

  • Referenced in 10 articles [sw14375]
  • genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that...
  • ABC

  • Referenced in 250 articles [sw10950]
  • research branch that models the population of interacting agents or swarms that are able ... functions and the results produced by ABC, Genetic Algorithm (GA), Particle Swarm Algorithm...
  • simuPOP

  • Referenced in 5 articles [sw11732]
  • simuPOP: a forward-time population genetics simulation environment. Summary: simuPOP is a forward-time population ... genetics simulation environment. The core of simuPOP is a scripting language (Python) that provides ... number of objects and functions to manipulate populations, and a mechanism to evolve populations forward ... simulations ranging from implementation of basic population genetics models to generating datasets under complex evolutionary...
  • LAMARC

  • Referenced in 6 articles [sw11443]
  • LAMARC is a program which estimates population-genetic parameters such as population size, population growth...
  • AABC

  • Referenced in 6 articles [sw16116]
  • performance of AABC on a population-genetic model of natural selection, as well ... model of the admixture history of hybrid populations...
  • Arlequin

  • Referenced in 4 articles [sw11442]
  • integrated software package for population genetics data analysis. Arlequin ver 3.0 is a software package ... several basic and advanced methods for population genetics data analysis, like the computation of standard ... genetic diversity indices, the estimation of allele and haplotype frequencies, tests of departure from linkage ... demographic equilibrium, estimation or parameters from past population expansions, and thorough analyses of population subdivision...
  • genetics

  • Referenced in 4 articles [sw24196]
  • package genetics: Population Genetics. Classes and methods for handling genetic data. Includes classes to represent...
  • Bio++

  • Referenced in 5 articles [sw23039]
  • sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed...
  • Serial SimCoal

  • Referenced in 3 articles [sw24734]
  • Serial SimCoal: A population genetics model for data from multiple populations and points in time ... Serial SimCoal, a program that models population genetic data from multiple time points, as with ... complex demographic histories, and migration between multiple populations. Further, we incorporate a statistical package...
  • WhatsHap

  • Referenced in 4 articles [sw23105]
  • crucial for downstream analyses in population genetics. Currently, statistical approaches, which are oblivious to direct...
  • ProbABEL

  • Referenced in 6 articles [sw10861]
  • based studies, studies performed in human genetically isolated populations and outbred animal populations. Conclusions: ProbABEL...
  • MAPMAKER

  • Referenced in 6 articles [sw18435]
  • experimental and natural populations. With the advent of RFLPs, genetic linkage maps are now being ... number of organisms including both inbred experimental populations such as maize ... outhred natural populations such as humans. Accurate construction of such genetic maps requires multipoint linkage...
  • GenAlEx

  • Referenced in 2 articles [sw07871]
  • offers a wide range of population genetic analysis options for the full spectrum of genetic ... offers an ideal launching pad for population genetic analysis by students, teachers and researchers alike...
  • GENEPOP

  • Referenced in 3 articles [sw17742]
  • GENEPOP is a population genetics software package originally developed by Michel Raymond (Raymond@isem.univ-montp2.fr) and Francois...
  • CLUMPP

  • Referenced in 3 articles [sw08998]
  • variety of settings. In population-genetic clustering algorithms, such as BAPS, STRUCTURE and TESS, individual...
  • fastSTRUCTURE

  • Referenced in 2 articles [sw25207]
  • data sets. Tools for estimating population structure from genetic data are now used ... wide variety of applications in population genetics. However, inferring population structure in large modern data...
  • Pegas

  • Referenced in 1 article [sw19001]
  • Pegas: an R package for population genetics with an integrated-modular approach. Summary: pegas (Population ... package for the analysis of population genetic data. It is written ... adegenet). pegas provides functions for standard population genetic methods, as well as low-level functions ... software dedicated to the analysis of population genetic data. Availability: pegas is distributed through...