• ABC

  • Referenced in 257 articles [sw10950]
  • intelligence is a research branch that models the population of interacting agents or swarms that...
  • NONMEM

  • Referenced in 33 articles [sw08344]
  • nonlinear mixed effects modelling tool used in population pharmacokinetic/pharmacodynamic analysis. NONMEM stands for NONlinear Mixed ... appropriate statistical analysis using the appropriate model helps pharmaceutical companies determine appropriate dosing strategies ... years for population analysis by many pharmaceutical companies and the PK/PD modeling community. Its continued...
  • Mplus

  • Referenced in 321 articles [sw06511]
  • Mplus offers researchers a wide choice of models, estimators, and algorithms in a program that ... multilevel data, data that come from different populations with either observed or unobserved heterogeneity ... analyzed according to any of the models included in the program...
  • Rcapture

  • Referenced in 10 articles [sw13992]
  • types of models. With a closed population model, the goal of the analysis ... estimators for N. In an open population model, immigration and death occur between sampling periods ... features two levels of sampling; closed population models apply within primary periods and an open ... population model applies between periods. Most models in Rcapture have a loglinear form; they...
  • PSPManalysis

  • Referenced in 15 articles [sw20475]
  • evolutionary analysis of physiologically structured population models (PSPMs), which is a class of models that ... translates continuous-time models of individual life history to the population level. The software package ... reasons of computational efficiency the user-defined model of individual life history...
  • DYNAMO

  • Referenced in 249 articles [sw01227]
  • DYNAMO (DYNAmic MOdels) was a simulation language and accompanying graphical notation developed within the system ... soon extended to other applications, including population and resource studies[1][2] and urban planning...
  • MSMS

  • Referenced in 6 articles [sw34261]
  • coalescent simulation program for a structured population with selection at a single diploid locus ... functionality of the simulator ms to model population structure and demography, but adds a model ... hard and soft selective sweeps in structured populations or the genetic footprint of local adaptation...
  • PROC GENMOD

  • Referenced in 27 articles [sw11741]
  • traditional linear models that allows the mean of a population to depend on a linear ... family of distributions. Many widely used statistical models are generalized linear models. These include classical...
  • Latent GOLD

  • Referenced in 88 articles [sw11673]
  • Wolfe (1965, 1967, 1970) and others. FM models seek to separate ... from a finite number of distinctly different populations...
  • popbio

  • Referenced in 4 articles [sw23539]
  • popbio: Construction and Analysis of Matrix Population Models. Construct and analyze projection matrix models from ... package covers methods described in Matrix Population Models by Caswell (2001) and Quantitative Conservation Biology...
  • Eigenstrat

  • Referenced in 50 articles [sw33845]
  • EIGENSOFT package combines functionality from our population genetics methods (Patterson ... method uses principal components analysis to explicitly model ancestry differences between cases and controls along ... marker’s variation in frequency across ancestral populations, minimizing spurious associations while maximizing power...
  • MCPSO

  • Referenced in 16 articles [sw30149]
  • based on a master-slave model, in which a population consists of one master swarm...
  • AABC

  • Referenced in 6 articles [sw16116]
  • data sets simulated from the parametric model and the sample size of the observed data ... performance of AABC on a population-genetic model of natural selection, as well ... model of the admixture history of hybrid populations...
  • Serial SimCoal

  • Referenced in 3 articles [sw24734]
  • Serial SimCoal: A population genetics model for data from multiple populations and points in time ... present Serial SimCoal, a program that models population genetic data from multiple time points ... allows simultaneous modeling of complex demographic histories, and migration between multiple populations. Further, we incorporate...
  • FRED

  • Referenced in 3 articles [sw23562]
  • control strategies using census-based populations. Mathematical and computational models provide valuable tools that help ... depends on the mixing patterns within the population, and these mixing patterns depend in part ... population, including realistic household, school, and workplace social networks. FRED epidemic models are currently available ... Keywords: Pandemic influenza, Simulator, Agent-based model, Synthetic population, Influenza modeling...
  • MARK

  • Referenced in 23 articles [sw24801]
  • Program MARK: Survival Estimation from Populations of Marked Animals. MARK provides parameter estimates from marked ... attribute group of animals can be modelled. The basic input to MARK is the encounter ... also estimate the size of closed populations. Parameters can be constrained to be the same ... parameter index matrix. A set of common models for initial screening of data are provided...
  • PFIM

  • Referenced in 3 articles [sw07012]
  • PFIM : population design evaluation and optimisation. PFIM (Population Fisher Information Matrix) is a R function ... time) for nonlinear mixed effects models (population approach). This function is based on the developpement ... Fisher information matrix in these model...
  • HapMix

  • Referenced in 6 articles [sw33847]
  • method, HAPMIX, which employs an explicit population genetic model to perform such local ancestry inference ... utility for inferring ancestry, learning about ancestral populations, and inferring dates of admixture. We validate...
  • GillespieSSA

  • Referenced in 10 articles [sw21016]
  • generating simulated trajectories of finite population continuous-time model. Currently it implements Gillespie’s exact...
  • SHRiMP

  • Referenced in 15 articles [sw17146]
  • opening the door to population genomic studies of non-model species. In this paper...