• STRUCTURE

  • Referenced in 70 articles [sw13672]
  • multi-locus genotype data to investigate population structure. Its uses include inferring the presence...
  • PSPManalysis

  • Referenced in 17 articles [sw20475]
  • bifurcation and evolutionary analysis of physiologically structured population models (PSPMs), which is a class...
  • MSMS

  • Referenced in 7 articles [sw34261]
  • coalescent simulation program for a structured population with selection at a single diploid locus ... simulator ms to model population structure and demography, but adds a model for deme ... hard and soft selective sweeps in structured populations or the genetic footprint of local adaptation...
  • PyClone

  • Referenced in 8 articles [sw26928]
  • PyClone: statistical inference of clonal population structure in cancer. We introduce PyClone, a statistical model ... inference of clonal population structures in cancers. PyClone is a Bayesian clustering method for grouping...
  • BAPS 2

  • Referenced in 7 articles [sw35649]
  • possibilities for the analysis of genetic population structure. Bayesian statistical methods based on simulation techniques ... tools for the analysis of genetic population structure. We have previously developed a Markov chain...
  • BIANCA

  • Referenced in 13 articles [sw02081]
  • optimisation of composite laminates is a multi-population genetic algorithm capable to deal with unconstrained ... representation of the information, i.e., the structure of populations and individuals in BIANCA ... general problems of optimisation of materials and structures. In this paper, we describe specifically...
  • Sfold

  • Referenced in 13 articles [sw23820]
  • paradigm for the prediction of RNA secondary structure. One of the main objectives of this ... likely existence of a population of structures for the target mRNA. In addition...
  • PSMIX

  • Referenced in 5 articles [sw13670]
  • PSMIX: an R package for population structure inference via maximum likelihood method. Background: Inference ... population stratification and individual admixture. Conclusion: Compared with software based on Bayesian methods (e.g., STRUCTURE...
  • admixture

  • Referenced in 5 articles [sw26449]
  • software is widely used to estimate population structure from genotype data in part because ... likelihood estimates of the admixture proportions and population allele frequencies using the expectation maximization...
  • Matrix eQTL

  • Referenced in 5 articles [sw20450]
  • used to study the regulatory structure of normal tissues and to search for genetic factors ... account for such factors as population structure, gender, and clinical variables. It also supports testing...
  • GEMMA

  • Referenced in 4 articles [sw23999]
  • single phenotype to account for population stratification and sample structure, and for estimating the proportion ... with multiple phenotypes simultaneously while controlling for population stratification, and for estimating genetic correlations among ... modeling all markers while controlling for population structure. It estimates variance component/chip heritability, and partitions...
  • fastSTRUCTURE

  • Referenced in 2 articles [sw25207]
  • fastSTRUCTURE: variational inference of population structure in large SNP data sets. Tools for estimating population ... applications in population genetics. However, inferring population structure in large modern data sets imposes severe ... hierarchical prior to detect weak population structure in the data. We test the variational algorithms ... number of populations represented in the data, with minimal bias toward detecting structure when...
  • TASSEL

  • Referenced in 5 articles [sw11446]
  • confounding effects of both population and family structure. TASSEL (Trait Analysis by aSSociation, Evolution ... linear model approaches for controlling population and family structure. For result interpretation, the program allows...
  • CLUMPP

  • Referenced in 3 articles [sw08998]
  • switching and multimodality in analysis of population structure. Clustering of individuals into populations ... settings. In population-genetic clustering algorithms, such as BAPS, STRUCTURE and TESS, individual multilocus genotypes...
  • SORTIE

  • Referenced in 3 articles [sw16636]
  • Competition for light in forest population dynamics: from computer simulator to mathematical model. In this ... construct a size structured population dynamics model with one and two species and with spatial...
  • TESD

  • Referenced in 2 articles [sw35415]
  • populations. In addition, the influence of population structuring has only recently been investigated. Transposable Element ... insertions; and (ii) population parameters, such as population size and migration rates. The simulations ... dynamic fate of TEs in structured populations, can be extended by using more specific molecular...
  • NERF

  • Referenced in 3 articles [sw01106]
  • aggregated fatigue behaviour of a population of structures or components which possibly contain a crack ... description of the applied load sequence and population variations about the mean, NERF computes, among ... best strategy for a particular population of structures. This document details the reliability models that...
  • Qxpak

  • Referenced in 3 articles [sw35126]
  • more importantly - to correct for population structure in association studies. In crosses, two parental lines...
  • Altruist

  • Referenced in 2 articles [sw32832]
  • Computer simulation of biological evolution in structured populations. Altruist is a software package for simulation ... genetic evolution in structured or viscous populations. The purpose is to test certain scientific models...
  • SPAGEDi

  • Referenced in 2 articles [sw07534]
  • characterise the spatial genetic structure of mapped individuals and/or mapped populations using genotype data ... Pollok 1997) for analyses at the population level and, for analyses at the individual level ... provide ad hoc tests of spatial structure, population differentiation or inbreeding, respectively. A new allele ... sizes carry a relevant information about genetic structure (Hardy & al. 2003 Genetics.pdf). In addition...