• SCALCG

  • Referenced in 91 articles [sw08453]
  • scaled conjugate gradient algorithm and its implementation, based on an interpretation of the secant equation ... positive definiteness of the matrix defining the search direction. This modification is based...
  • ELAN

  • Referenced in 108 articles [sw02179]
  • data types and the function evaluation principle based on rewriting. But rewriting is inherently ... several rules can be applied at different positions in a same term, and in ELAN ... contrast to many existing rewriting-based languages where the term reduction strategy is hard-wired...
  • iNuc-PseKNC

  • Referenced in 31 articles [sw16607]
  • iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo...
  • latentnet

  • Referenced in 12 articles [sw10550]
  • package to fit and evaluate statistical latent position and cluster models for networks. Hoff, Raftery ... suggested an approach to modeling networks based on positing the existence of an latent space ... model to allow for clustering of the positions developed in Handcock, Raftery, and Tantrum ... package implements Bayesian inference for the models based on an Markov chain Monte Carlo algorithm...
  • GOLEM

  • Referenced in 51 articles [sw24695]
  • positive examples relative to the available background knowledge. The principle is based on the relative ... clause, it randomly selects several pairs of positive examples and computes their rlggs. Among these...
  • JASPAR

  • Referenced in 37 articles [sw18502]
  • regulatory regions in genome sequences is strongly based on the detection of potential transcription factor ... transcription factor binding specificity have been termed position‐specific scoring matrices. JASPAR is an open ... access database of annotated, high‐quality, matrix‐based transcription factor binding site profiles for multicellular...
  • DEVEX

  • Referenced in 98 articles [sw08378]
  • allowing that a constraint may not be positioned so exactly as its precise representation ... making room for a further selection criterion based on pivot size. Three examples are given...
  • GaussQR

  • Referenced in 51 articles [sw28260]
  • website, developed both to facilitate experimentation with positive definite kernels (radial basis functions ... supplemental content for the new book Kernel-Based Approximation Methods in MATLAB available from World...
  • PSwarm

  • Referenced in 59 articles [sw00742]
  • highly competitive with other global optimization methods based only on function values. PSwarm is extended ... linear constraints. The poll step now incorporates positive generators for the tangent cone...
  • miTarget

  • Referenced in 4 articles [sw27473]
  • functions of animal miRNAs are generally based on complementarity for their 5’ components. Although several ... features, categorized by structural, thermodynamic, and position-based features. The latter features are introduced ... revealed the importance of pairing at positions 4, 5, and 6 in the 5’ region...
  • logcondens

  • Referenced in 48 articles [sw11215]
  • concave densities, (6) the ROC curve based on log-concave estimates within cases and controls ... confidence intervals for given values of false positive fractions (7) computation of a confidence interval...
  • iNuc-PhysChem

  • Referenced in 24 articles [sw22453]
  • sequence-based predictor for identifying nucleosomes via physicochemical properties. Nucleosome positioning has important roles...
  • Boltzmann

  • Referenced in 40 articles [sw07008]
  • equation of rarefied gas. The methods are based on a time splitting technique. The transport ... third order accurate (in space) positive and flux conservative (PFC) method. The collision step...
  • ILUPACK

  • Referenced in 20 articles [sw10477]
  • symmetric (Hermitian) positive definite systems. The basic idea of ILUPACK is based on inverse-based...
  • NSIKE

  • Referenced in 8 articles [sw11777]
  • stabilization of convection terms is based on PSI (positive streamwise invariant) residual distribution scheme...
  • multtest

  • Referenced in 20 articles [sw08262]
  • testing. Non-parametric bootstrap and permutation resampling-based multiple testing procedures (including empirical Bayes methods ... false positives (TPPFP), and false discovery rate (FDR). Several choices of bootstrap-based null distribution...
  • Refiner

  • Referenced in 5 articles [sw00790]
  • level implementation details. Refiner is based on Posit, a high-level object-oriented modeling...
  • Algorithm 731

  • Referenced in 37 articles [sw12847]
  • these techniques, a moving-grid method based on a Lagrangian description ... smoothed-equidistribution principle to define the grid positions at each time level, has been coupled...
  • CWRESU

  • Referenced in 37 articles [sw12903]
  • these techniques, a moving-grid method based on a Lagrangian description ... smoothed-equidistribution principle to define the grid positions at each time level, has been coupled...
  • CWRESX

  • Referenced in 37 articles [sw12904]
  • these techniques, a moving-grid method based on a Lagrangian description ... smoothed-equidistribution principle to define the grid positions at each time level, has been coupled...