• PROFIL/BIAS

• Referenced in 125 articles [sw00733]
• PROFIL (Programmer’s Runtime Optimized Fast Interval Library) is a C++ class library supporting ... matrices of these types, and complex numbers. PROFIL is based on BIAS (Basic Interval Arithmetic...

• Valgrind

• Referenced in 55 articles [sw04420]
• many memory management and threading bugs, and profile your programs in detail. You can also ... error detectors, a cache and branch-prediction profiler, a call-graph generating cache and branch ... prediction profiler, and a heap profiler. It also includes three experimental tools: a heap/stack/global array ... overrun detector, a second heap profiler that examines how heap blocks are used...

• Pellet

• Referenced in 92 articles [sw07019]
• essential. Pellet includes support for OWL 2 profiles including OWL 2 EL. It incorporates optimizations...

• TRANSFAC

• Referenced in 73 articles [sw17201]
• their genomic binding sites and DNA-binding profiles (http://transfac.gbf.de/TRANSFAC/ ). Its content has been...

• MUSCLE

• Referenced in 70 articles [sw13193]
• kmer counting, progressive alignment using a new profile function we call the log‐expectation score...

• JASPAR

• Referenced in 39 articles [sw18502]
• access database for eukaryotic transcription factor binding profiles. The analysis of regulatory regions in genome ... quality, matrix‐based transcription factor binding site profiles for multicellular eukaryotes. The profiles were derived...

• Cytoscape

• Referenced in 61 articles [sw09080]
• visually integrate the network with expression profiles, phenotypes, and other molecular states; and to link...

• Nike2D

• Referenced in 59 articles [sw12115]
• used for the spatial discretization, and profile (bandwidth) minimization is optional...

• BSPlib

• Referenced in 41 articles [sw03374]
• performance tuning using BSP. A call-graph profiling tool has been designed and implemented ... improvement. A unique feature of this profiler is that it uses the bulk synchronous parallel...

• PROSITE

• Referenced in 35 articles [sw17326]
• PROSITE: a documented database using patterns and profiles as motif. Among the various databases dedicated ... motifs that are described as patterns or profiles, and linked to documentation briefly describing...

• StirMark

• Referenced in 34 articles [sw19164]
• automated independent public service with extended evaluation profiles to evaluate quickly watermarking libraries. This ... evaluated using an evaluation profile (basically list of tests and images) you specify. During...

• SMIL

• Referenced in 41 articles [sw03378]
• modules. Define new SMIL 3.0 Mobile Profiles incorporating features useful within the industry. SMIL...

• refund

• Referenced in 40 articles [sw07434]
• counts and to dense white-matter tract profiles. Code for the analyses and simulations...

• MARTE

• Referenced in 21 articles [sw21826]
• Embedded systems. This specification of a UML® profile adds capabilities to UML for model-driven ... Systems (RTES). This extension, called the UML profile for MARTE (in short MARTE), provides support ... specification, design, and verification/validation stages. This new profile is intended to replace the existing ... Profile for Schedulability, Performance and Time (formal/03-09-01). MARTE consists in defining foundations for model-based...

• Mosel

• Referenced in 36 articles [sw04911]
• tools such as the Mosel debugger and profiler. The Mosel libraries provide the neccessary functionality...

• PREMIX

• Referenced in 34 articles [sw27815]
• computer program that computes species and temperature profiles in steady-state burner-stabilized and freely...

• Gaigen

• Referenced in 33 articles [sw04958]
• generate with it by using the provided profiler function. Benchmarks in a ray tracing application...

• Rfam

• Referenced in 32 articles [sw04637]
• slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam...

• ARACNE

• Referenced in 32 articles [sw17200]
• ARACNE, a novel algorithm, using microarray expression profiles, specifically designed to scale...

• Image Processing Toolbox

• Referenced in 31 articles [sw13352]
• high dynamic range, gigapixel resolution, embedded ICC profile, and tomographic. Visualization functions and apps...