• KEGG

  • Referenced in 252 articles [sw13866]
  • system, consisting of molecular building blocks of genes and proteins (genomic information) and chemical substances...
  • DIMA

  • Referenced in 4 articles [sw26868]
  • Conserved domains represent essential building blocks of most known proteins. Owing to their role...
  • PATMAT

  • Referenced in 2 articles [sw35917]
  • extraction program for sequence, pattern and block queries and databases. A program has been developed ... uses a very simple interface. PATMATcan use protein ... translated) DNA sequences, patterns or blocks of aligned proteins as queries of databases consisting...
  • RVMAB

  • Referenced in 1 article [sw24037]
  • biological tool for predicting SIPs based on protein sequences is very import. In the paper ... Relevance Vector Machine (RVM) model and Average Blocks ... detecting SIPs from protein sequences. Firstly, Average Blocks (AB) feature extraction method is employed...
  • ProSTRIP

  • Referenced in 1 article [sw20833]
  • protein structure has evolved through gene duplication. These repeats act as a structural building block ... functional unit called a repeat domain. The protein families comprising similar structural repeats are mainly...
  • ElNemo

  • Referenced in 1 article [sw22480]
  • emerging field of NMA is related to protein structure determination by X-ray crystallography, where ... rotation-translation-block’ (RTB) approximation implemented in ElNémo, there is virtually no upper limit ... size of the proteins that can be treated. Upon input of a protein structure...
  • RESCUE

  • Referenced in 0 articles [sw20770]
  • peptides and proteins and can also be used as a block in an automated approach...
  • HaploReg

  • Referenced in 2 articles [sw31869]
  • noncoding genome at variants on haplotype blocks, such as candidate regulatory SNPs at disease-associated ... visualized along with chromatin state and protein binding annotation from the Roadmap Epigenomics and ENCODE...
  • Nomad

  • Referenced in 1 article [sw09378]
  • multiple alignment (ULMA) problem, also known as ”blocks”. By using an entropy-based objective function ... Nomad is well suited to deal with protein sequences. This objective function, the shared entropy...
  • eHive

  • Referenced in 2 articles [sw27408]
  • network distributed autonomous agents, dataflow graphs and block-branch diagrams. In the eHive system ... genome alignments and (3) gene trees with protein homology inference. Finally, we show the efficiency...
  • 3DNA

  • Referenced in 3 articles [sw21991]
  • structures. Starting from a coordinate file in Protein Data Bank (PDB) format, 3DNA can handle ... these parameters. The rebuilding routines produce rectangular block representations of nucleic acids as well...
  • Kink-detector

  • Referenced in 2 articles [sw29680]
  • shape of (alpha)-helices in proteins, we formulate a parametric statistical model, which incorporates ... less straightforward. Our biological building block is crowdsourced data on straight and kinked helices; which...
  • CGAL

  • Referenced in 355 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • GAP

  • Referenced in 2850 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • LAPACK

  • Referenced in 1626 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Maple

  • Referenced in 5040 articles [sw00545]
  • The result of over 30 years of cutting...
  • MATCONT

  • Referenced in 363 articles [sw00551]
  • MATCONT: Matlab software for bifurcation study of dynamical...
  • Mathematica

  • Referenced in 5883 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 12074 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • PARI/GP

  • Referenced in 586 articles [sw00680]
  • PARI/GP is a widely used Computer Algebra System...