• PDB-REPRDB

• Referenced in 5 articles [sw26865]
• numbers of membrane protein structures because of improved X-ray crystallography, NMR, and electron microscopic...

• ADP_EM

• Referenced in 3 articles [sw16893]
• growth of atomic models of protein domains from crystallography or comparative modeling, and low-resolution...

• VADAR

• Referenced in 6 articles [sw12496]
• quantitatively and qualitatively assessing protein structures determined by X-ray crystallography, NMR spectroscopy, 3D-threading...

• Situs

• Referenced in 4 articles [sw09515]
• high-resolution structures of proteins determined by x-ray crystallography. A set of visualization ... robust method for the localization of protein subunits in low-resolution data. Topology-representing neural...

• mmLib

• Referenced in 4 articles [sw04609]
• macromolecular crystallography, NMR, modeling, and visualization. This includes specialized classes for proteins, DNA, amino acids...

• CCP4

• Referenced in 5 articles [sw22910]
• determine macromolecular structures by X-ray crystallography, and other biophysical techniques. CCP4 aims to develop ... approaches to experimental determination and analysis of protein structure, and integrate these approaches into...

• ElNemo

• Referenced in 1 article [sw22480]
• related to protein structure determination by X-ray crystallography, where normal mode perturbed models ... upper limit to the size of the proteins that can be treated. Upon input...

• Mathematica

• Referenced in 5883 articles [sw00554]
• Almost any workflow involves computing results, and that...

• R

• Referenced in 8359 articles [sw00771]
• R is a language and environment for statistical...

• UEGO

• Referenced in 16 articles [sw02239]
• UEGO, an abstract clustering technique for multimodal global...

• Qhull

• Referenced in 297 articles [sw04419]
• The convex hull of a point set P...

• ape

• Referenced in 55 articles [sw04569]
• R package ape: Analyses of Phylogenetics and Evolution...

• Rfam

• Referenced in 33 articles [sw04637]
• The Rfam database is a collection of RNA...

• BioJava

• Referenced in 13 articles [sw05334]
• BioJava aims to provide a comprehensive set of...

• ALLPATHS

• Referenced in 15 articles [sw06112]
• ALLPATHS-LG is a whole-genome shotgun assembler...

• Biopython

• Referenced in 16 articles [sw07357]
• Biopython: freely available Python tools for computational molecular...

• PHENIX

• Referenced in 4 articles [sw07392]
• PHENIX: a comprehensive Python-based system for macromolecular...

• PHYLIP

• Referenced in 97 articles [sw07694]
• PHYLIP is a free package of programs for...

• MrBayes

• Referenced in 49 articles [sw07715]
• MrBayes: Bayesian Inference of Phylogeny. MrBayes is a...

• RAxML

• Referenced in 34 articles [sw07716]
• Parallel inference of a 10.000-taxon phylogeny with...