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  • AUTO-MUTE
  • Referenced in 9 articles [sw16878]
  • developed for predicting stability changes upon single residue substitutions in proteins with known native structures ... Trained models classify independent mutant test sets with accuracies ranging from 87 to 94%. Attributes...

  • CUPSAT
  • Referenced in 3 articles [sw16877]
  • tool to analyse and predict protein stability changes upon point mutations (single amino acid mutations ... wild-type and mutant proteins. It requires the protein structure in Protein Data Bank format ... comprehensive information about changes in protein stability for 19 possible substitutions of a specific amino...

  • R
  • Referenced in 8359 articles [sw00771]
  • R is a language and environment for statistical...

  • MIRA
  • Referenced in 1 article [sw02392]
  • MIRA is a multi-pass DNA sequence data...

  • STAR
  • Referenced in 12 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

  • Bioconductor
  • Referenced in 298 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...

  • GlobPlot
  • Referenced in 8 articles [sw06213]
  • GlobPlot: exploring protein sequences for globularity and disorder...

  • Biopython
  • Referenced in 16 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...

  • MAFFT
  • Referenced in 41 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...

  • Soap
  • Referenced in 37 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...

  • EMan
  • Referenced in 8 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...

  • PyMOL
  • Referenced in 38 articles [sw09662]
  • PyMOL is a powerful and comprehensive molecular visualization...

  • HMMER
  • Referenced in 17 articles [sw10514]
  • HMMER web server: interactive sequence similarity searching. HMMER...

  • bioperl
  • Referenced in 20 articles [sw10579]
  • The bioperl toolkit: Perl modules for the life...

  • Sweave
  • Referenced in 42 articles [sw10621]
  • Sweave is a tool that allows to embed...

  • EMBOSS
  • Referenced in 34 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...

  • Naccess
  • Referenced in 8 articles [sw12485]
  • naccess 2.1.1 Atomic Solvent Accessible Area Calculation Software...

  • SOPRA
  • Referenced in 7 articles [sw12607]
  • SOPRA: scaffolding algorithm for paired reads via statistical...