• UniProt

  • Referenced in 128 articles [sw21320]
  • sequencing projects. We have created a new proteome identifier that uniquely identifies a particular assembly...
  • Cell-PLoc

  • Referenced in 90 articles [sw09126]
  • proteins is important to molecular cell biology, proteomics, system biology and drug discovery. To provide...
  • BioNetGen

  • Referenced in 53 articles [sw09072]
  • relevant for rational drug discovery, analysis of proteomic data and mechanistic studies of signal transduction...
  • edgeR

  • Referenced in 46 articles [sw06936]
  • other applications beyond sequencing data, such as proteome peptide count data...
  • Pse-in-One

  • Referenced in 41 articles [sw22407]
  • become a very useful tool in computational proteomics, genomics, as well as biological sequence analysis...
  • iLoc-Euk

  • Referenced in 37 articles [sw22434]
  • useful bioinformatics tool for Molecular Cell Biology, Proteomics, System Biology, and Drug Development Also...
  • PatternHunter

  • Referenced in 33 articles [sw20963]
  • more sensitive homology search. MOTIVATION: Genomics and proteomics studies routinely depend on homology searches based...
  • pSuc-Lys

  • Referenced in 31 articles [sw16643]
  • analyze many other problems in computational proteomics...
  • Psortb

  • Referenced in 18 articles [sw11344]
  • subcellular localization and insights gained from comparative proteome analysis. Motivation: PSORTb v.1.1 is the most ... coverage comparable to other tools for whole proteome analysis. We show that the proportion ... across species, even in species with varying proteome size. Availability: Web-based version: http://www.psort.org...
  • mixOmics

  • Referenced in 28 articles [sw09508]
  • omics data (e.g. transcriptomics, metabolomics or proteomics data) that require an integrative or joint analysis...
  • Plant-mPLoc

  • Referenced in 27 articles [sw22435]
  • localization. One of the fundamental goals in proteomics and cell biology is to identify...
  • ExPASy

  • Referenced in 14 articles [sw34228]
  • ExPASy: the proteomics server for in-depth protein knowledge and analysis. The ExPASy (the Expert ... analytical tools dedicated to proteins and proteomics. ExPASy databases include SWISS-PROT and TrEMBL, SWISS ... available for specific tasks relevant to proteomics, similarity searches, pattern and profile searches, post-translational ... elsewhere, and the proteomics tools have been designed to read the annotations in SWISS-PROT...
  • iMethyl-PseAAC

  • Referenced in 21 articles [sw22443]
  • PTMs in proteins is crucial for dynamic proteome analysis of various human diseases and epigenetic...
  • FatiGO

  • Referenced in 20 articles [sw12318]
  • genome-scale experiment (DNA microarray, proteomics, etc.). Said procedure has been implemented...
  • iLoc-Plant

  • Referenced in 18 articles [sw22419]
  • useful bioinformatics tool for Molecular Cell Biology, Proteomics, Systems Biology, and Drug Development...
  • iCar-PseCp

  • Referenced in 18 articles [sw23951]
  • analyze many other problems in computational proteomics...
  • iTIS-PseTNC

  • Referenced in 15 articles [sw22449]
  • acid composition) approach widely used in computational proteomics. It was observed by the rigorous cross...
  • iProt-Sub

  • Referenced in 14 articles [sw27604]
  • will be a powerful tool for proteome-wide prediction of protease-specific substrates and their...
  • OrthoMCL

  • Referenced in 14 articles [sw29602]
  • annotation. OrthoMCL has been applied to the proteome data set from seven publicly available genomes...
  • GlobPlot

  • Referenced in 8 articles [sw06213]
  • disorder. A major challenge in the proteomics and structural genomics era is to predict protein ... advanced user to do whole proteome analysis. GlobPlot can also be used as a generic...