• bioperl

  • Referenced in 20 articles [sw10579]
  • bioinformatics applications (Run package), software to automate bioinformatic analyses (bioperl-pipeline) are all available...
  • Orca

  • Referenced in 5 articles [sw09792]
  • organized conceptually into segments of a pipeline. The software design takes advantage of the object ... Java language to open up the data pipeline, allowing developers to have greater control over...
  • Crossbow

  • Referenced in 3 articles [sw34367]
  • Crossbow is a scalable software pipeline for whole genome resequencing analysis. It combines Bowtie...
  • Sehwa

  • Referenced in 9 articles [sw08111]
  • Sehwa: a software package for synthesis of pipelines from behavioral specification. A set of techniques...
  • MethylCoder

  • Referenced in 2 articles [sw35177]
  • MethylCoder: software pipeline for bisulfite-treated sequences. Motivation: MethylCoder is a software program that generates...
  • SimVascular

  • Referenced in 8 articles [sw25043]
  • SimVascular: An Open Source Pipeline for Cardiovascular Simulation. Patient-specific cardiovascular simulation has become ... fully open-source SimVascular software package, which provides a complete pipeline from medical image data ... planning and medical device design. The SimVascular software has recently been refactored and expanded ... components to create a fully open source pipeline. These developments foster advances in cardiovascular modeling...
  • VoxelPipe

  • Referenced in 2 articles [sw14878]
  • present a highly flexible and efficient software pipeline for programmable triangle voxelization. The pipeline, entirely...
  • HAL_

  • Referenced in 2 articles [sw07224]
  • grained level and the use of software pipelining. In this paper, we describe the design...
  • miRNAkey

  • Referenced in 1 article [sw29585]
  • miRNAkey - A software pipeline for the analysis of microRNA Deep Sequencing data. Deep Sequencing technologies ... mode of miRNA regulation. miRNAkey is a software package designed to be used...
  • ProteoAnnotator

  • Referenced in 1 article [sw31810]
  • ProteoAnnotator is a completely automated software pipeline for integration of mass spectrometry (MS) based proteomic...
  • emba

  • Referenced in 1 article [sw35159]
  • simulation data results of the DrugLogics software pipeline which predicts synergistic drug combinations in cancer...
  • StreamTMC

  • Referenced in 1 article [sw07456]
  • three optimization phases. First, a software pipelining schedule is constructed to exploit the parallelism. Second...
  • SIMONE

  • Referenced in 10 articles [sw17978]
  • distribution. SIMONE software system is designed to be a valuable tool for: Pipeline system designers...
  • Anaconda

  • Referenced in 11 articles [sw24789]
  • software platform that enables organizations to develop, govern, and automate data science and AI pipelines...
  • MethPipe

  • Referenced in 1 article [sw30174]
  • sequencing data. The MethPipe software package is a computational pipeline for analyzing bisulfite sequencing data ... RRBS). The MethPipe software package is a computational pipeline for analyzing bisulfite sequencing data (WGBS...
  • PIPER

  • Referenced in 28 articles [sw11478]
  • issues in making model checking viable for software. This paper proposes new techniques for automating ... file reader from the pipelined implementation of a web server...
  • FlowDesigner

  • Referenced in 1 article [sw33642]
  • approaches and variety of existing software solutions for pipeline systems modeling. There is pipeline systems ... branched multi-element pipeline systems calculation. Simulated pipeline system can have arbitrary topology and isolated ... elements modeling and their application within the software product “FlowDesigner” are described...
  • Orione

  • Referenced in 1 article [sw16940]
  • However, the construction of computational pipelines that use different software packages is difficult owing ... consisting of publicly available research software and specifically designed pipelines to build complex, reproducible workflows ... custom analysis and data manipulation without software installation or programming, Orione provides new opportunities...
  • X-Pipeline

  • Referenced in 1 article [sw30362]
  • fully automated search with X-Pipeline, a software package for the coherent analysis of data ... astrophysical triggers. We discuss the methods X-Pipeline uses for automated running, including background estimation...
  • Minimus

  • Referenced in 2 articles [sw17156]
  • simpler type of assembler that requires fewer software components, uses less memory ... larger assembly pipeline. We show that, unlike other software currently used for these tasks, Minimus ... complex assembly pipelines. Minimus is released as an open-source software project and the code...