• Blender

  • Referenced in 16 articles [sw08125]
  • small studios who benefit from its unified pipeline and responsive development process. Examples from many ... collaborative tool: Blender is your own 3D software...
  • BSmooth

  • Referenced in 11 articles [sw23483]
  • BSmooth, an alignment, quality control and analysis pipeline that provides accurate and precise results even ... handling biological replicates. BSmooth is open source software, and can be downloaded from http://rafalab.jhsph.edu...
  • G+Smo

  • Referenced in 33 articles [sw14372]
  • unified framework in the design and analysis pipeline. G+Smo is an object-oriented, cross ... providing access to high quality, open-source software to the forming isogeometric numerical simulation community...
  • caRpools

  • Referenced in 0 articles [sw18966]
  • lack of end-to-end software pipelines to analyze CRISPR/Cas9 screens based on next generation...
  • STXXL

  • Referenced in 16 articles [sw06824]
  • data sets We present a software library STXXL, that enables practice-oriented experimentation with huge ... external memory algorithm library that supports the pipelining technique that can save more than half...
  • BioContainers

  • Referenced in 1 article [sw27405]
  • same software and combine tools into powerful analysis pipelines. BioContainers is based on popular open ... projects Docker and rkt frameworks, that allow software to be installed and executed under ... integrated into more comprehensive bioinformatics pipelines and different architectures (local desktop, cloud environments ... clusters). Availability and Implementation: The software is freely available at github.com/BioContainers/....
  • Phantomas

  • Referenced in 2 articles [sw23302]
  • weighted MRI. The software allows evaluation of the whole tractography processing pipeline: acquisition design, preprocessing...
  • MetaOmics

  • Referenced in 1 article [sw16608]
  • made to develop a systematic pipeline and user-friendly software. In this article, we present ... combine different types of genomic data. This software suite provides a comprehensive tool to conveniently ... implement and compare various genomic meta-analysis pipelines. Availability: http://www.biostat.pitt.edu/bioinfo/software.htm...
  • G-TIME

  • Referenced in 1 article [sw07562]
  • Game of timing in gas pipeline projects competition: simulation software and generalized equilibrium solutions. Many...
  • LENTA

  • Referenced in 1 article [sw00511]
  • software package ”LENTA” for processing band matrices on a pipeline computer. (Russian). The programs from...
  • Jug

  • Referenced in 2 articles [sw27402]
  • Software for Parallel Reproducible Computation in Python. As computational pipelines become a bigger part ... fore in recent years. All developed software should be able to be run automatically without...
  • HTSanalyzeR

  • Referenced in 1 article [sw18845]
  • describe HTSanalyzeR, a flexible software to build integrated analysis pipelines for HTS data that contains ... HTML pages and network plots. Availability: Our software is written in the R language...
  • Prokka

  • Referenced in 2 articles [sw16996]
  • integrating into computational pipelines. Here we introduce Prokka, a command line software tool to fully...
  • FEMPAR

  • Referenced in 14 articles [sw21297]
  • open source object oriented Fortran200X scientific software library for the high-performance scalable simulation ... different steps of the simulation pipeline. FEMPAR includes a rich set of algorithms ... provide a detailed introduction to the software abstractions used in the discretization module...
  • TGICL

  • Referenced in 3 articles [sw35275]
  • software system for fast clustering of large EST datasets. TGICL is a pipeline for analysis...
  • BigDataScript

  • Referenced in 1 article [sw27403]
  • manage pipeline execution and provide robustness to various types of software and hardware failures ... BigDataScript (BDS) programming language for data processing pipelines, which improves abstraction from hardware resources...
  • FIMO

  • Referenced in 6 articles [sw17298]
  • nearly any motif-based sequence analysis pipeline is the ability to scan a sequence database ... describe Find Individual Motif Occurrences (FIMO), a software tool for scanning DNA or protein sequences...
  • pyJacqQ

  • Referenced in 1 article [sw23668]
  • proprietary SpaceStat software which is not suitable for a pipeline Linux environment. We have developed...
  • FastDMA

  • Referenced in 1 article [sw35032]
  • with an integrative pipeline and a high computational efficiency. The software is freely available...