• XPPAUT

  • Referenced in 375 articles [sw05543]
  • other useful routines. Differential equations, maps, stochastic systems, delay equations, integral equations, and other systems...
  • Bio-PEPAd

  • Referenced in 5 articles [sw10690]
  • Markovian extension of Bio-PEPA. Delays in biological systems may be used to model events ... possibility of assigning delays to actions, yielding a new non-Markovian stochastic process algebra ... papers on the stochastic simulation of biological systems with delays. This semantics of the algebra ... processes (GSMPs), as input for a delay stochastic simulation algorithm (DSSA) and as sets...
  • SGN Sim

  • Referenced in 8 articles [sw29325]
  • stochastic genetic networks simulator. We present SGNSim, ’Stochastic Gene Networks Simulator’, a tool to model ... multiple time delayed events and its dynamics is driven by a stochastic simulation algorithm...
  • DifferentialEquations.jl

  • Referenced in 7 articles [sw23910]
  • simulations), ordinary differential equations, stochastic differential equations, algebraic differential equations, delay differential equations, hybrid differential...
  • JiTCODE

  • Referenced in 4 articles [sw24715]
  • numerical integration of ordinary, delay, or stochastic differential equations. The key features are that ... transversal Lyapunov exponents for ordinary and delay differential equations. We conceptually discuss the modules’ design...
  • JiTCSDE

  • Referenced in 4 articles [sw24716]
  • numerical integration of ordinary, delay, or stochastic differential equations. The key features are that ... transversal Lyapunov exponents for ordinary and delay differential equations. We conceptually discuss the modules’ design...
  • JiTCDDE

  • Referenced in 3 articles [sw24714]
  • numerical integration of ordinary, delay, or stochastic differential equations. The key features are that ... transversal Lyapunov exponents for ordinary and delay differential equations. We conceptually discuss the modules’ design...
  • DiffEqFlux

  • Referenced in 3 articles [sw27559]
  • followed by a demonstration of delay differential equations and stochastic differential equations inside of neural...
  • sgnesR

  • Referenced in 1 article [sw29327]
  • real gene network structure considering delay parameters. sgnesR (Stochastic Gene Network Expression Simulator ... using the stochastic simulation algorithm (SSA). The package allows various options for delay parameters...
  • EmmPack

  • Referenced in 2 articles [sw09500]
  • with ox for estimation of univariate stochastic volatility models with the efficient method of moments ... cause extra delays. For the efficient method of moments implemented to estimate stochastic volatility models...
  • timedelay

  • Referenced in 0 articles [sw17892]
  • package timedelay. Time Delay Estimation for Stochastic Time Series of Gravitationally Lensed Quasars. We provide ... toolbox to estimate the time delay between the brightness time series of gravitationally lensed quasar...
  • FluTE

  • Referenced in 7 articles [sw31627]
  • epidemics or pandemics, we developed a new stochastic model of the spread of influenza across ... States and simulate how to mitigate or delay them using pharmaceutical interventions and social distancing...
  • CRAN Differential Equations

  • Referenced in 1 article [sw13722]
  • disciplines. Differential equations can be separated into stochastic versus deterministic DEs. Problems can be split ... partial differential equations, differential algebraic equations and delay differential equations. All these types...
  • HOSA

  • Referenced in 2 articles [sw21993]
  • There is much more information in a stochastic non-Gaussian or deterministic signal than ... parametric blind system identification, time-delay estimation, harmonic retrieval, phase-coupling, direction of arrival estimation...
  • ADOL-C

  • Referenced in 225 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • BARON

  • Referenced in 307 articles [sw00066]
  • BARON is a computational system for solving nonconvex...
  • C-XSC

  • Referenced in 106 articles [sw00181]
  • C-XSC. A programming environment for verified scientific...
  • LAPACK

  • Referenced in 1599 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Maple

  • Referenced in 4956 articles [sw00545]
  • The result of over 30 years of cutting...
  • MATCONT

  • Referenced in 340 articles [sw00551]
  • MATCONT: Matlab software for bifurcation study of dynamical...