
XPPAUT
 Referenced in 375 articles
[sw05543]
 other useful routines. Differential equations, maps, stochastic systems, delay equations, integral equations, and other systems...

BioPEPAd
 Referenced in 5 articles
[sw10690]
 Markovian extension of BioPEPA. Delays in biological systems may be used to model events ... possibility of assigning delays to actions, yielding a new nonMarkovian stochastic process algebra ... papers on the stochastic simulation of biological systems with delays. This semantics of the algebra ... processes (GSMPs), as input for a delay stochastic simulation algorithm (DSSA) and as sets...

SGN Sim
 Referenced in 8 articles
[sw29325]
 stochastic genetic networks simulator. We present SGNSim, ’Stochastic Gene Networks Simulator’, a tool to model ... multiple time delayed events and its dynamics is driven by a stochastic simulation algorithm...

DifferentialEquations.jl
 Referenced in 7 articles
[sw23910]
 simulations), ordinary differential equations, stochastic differential equations, algebraic differential equations, delay differential equations, hybrid differential...

JiTCODE
 Referenced in 4 articles
[sw24715]
 numerical integration of ordinary, delay, or stochastic differential equations. The key features are that ... transversal Lyapunov exponents for ordinary and delay differential equations. We conceptually discuss the modules’ design...

JiTCSDE
 Referenced in 4 articles
[sw24716]
 numerical integration of ordinary, delay, or stochastic differential equations. The key features are that ... transversal Lyapunov exponents for ordinary and delay differential equations. We conceptually discuss the modules’ design...

JiTCDDE
 Referenced in 3 articles
[sw24714]
 numerical integration of ordinary, delay, or stochastic differential equations. The key features are that ... transversal Lyapunov exponents for ordinary and delay differential equations. We conceptually discuss the modules’ design...

DiffEqFlux
 Referenced in 3 articles
[sw27559]
 followed by a demonstration of delay differential equations and stochastic differential equations inside of neural...

sgnesR
 Referenced in 1 article
[sw29327]
 real gene network structure considering delay parameters. sgnesR (Stochastic Gene Network Expression Simulator ... using the stochastic simulation algorithm (SSA). The package allows various options for delay parameters...

EmmPack
 Referenced in 2 articles
[sw09500]
 with ox for estimation of univariate stochastic volatility models with the efficient method of moments ... cause extra delays. For the efficient method of moments implemented to estimate stochastic volatility models...

timedelay
 Referenced in 0 articles
[sw17892]
 package timedelay. Time Delay Estimation for Stochastic Time Series of Gravitationally Lensed Quasars. We provide ... toolbox to estimate the time delay between the brightness time series of gravitationally lensed quasar...

FluTE
 Referenced in 7 articles
[sw31627]
 epidemics or pandemics, we developed a new stochastic model of the spread of influenza across ... States and simulate how to mitigate or delay them using pharmaceutical interventions and social distancing...

CRAN Differential Equations
 Referenced in 1 article
[sw13722]
 disciplines. Differential equations can be separated into stochastic versus deterministic DEs. Problems can be split ... partial differential equations, differential algebraic equations and delay differential equations. All these types...

HOSA
 Referenced in 2 articles
[sw21993]
 There is much more information in a stochastic nonGaussian or deterministic signal than ... parametric blind system identification, timedelay estimation, harmonic retrieval, phasecoupling, direction of arrival estimation...

ADOLC
 Referenced in 225 articles
[sw00019]
 ADOLC: Automatic Differentiation of C/C++. We present...

BARON
 Referenced in 307 articles
[sw00066]
 BARON is a computational system for solving nonconvex...

CXSC
 Referenced in 106 articles
[sw00181]
 CXSC. A programming environment for verified scientific...

LAPACK
 Referenced in 1599 articles
[sw00503]
 LAPACK is written in Fortran 90 and provides...

Maple
 Referenced in 4956 articles
[sw00545]
 The result of over 30 years of cutting...

MATCONT
 Referenced in 340 articles
[sw00551]
 MATCONT: Matlab software for bifurcation study of dynamical...