• EERTREE

  • Referenced in 7 articles [sw22040]
  • both the suffix trie and suffix tree. Using this structure, we present simple and efficient...
  • SSAHA

  • Referenced in 6 articles [sw17308]
  • FASTA, while requiring less memory than suffix tree methods. The SSAHAalgorithm is used for high...
  • RISOTTO

  • Referenced in 3 articles [sw28062]
  • motif inference algorithms based on suffix trees. An average case complexity analysis shows a gain...
  • STXXL

  • Referenced in 16 articles [sw06824]
  • computing minimum spanning trees, connected components, breadth-first search decompositions, constructing suffix arrays, and computing...
  • FLOTT

  • Referenced in 1 article [sw20576]
  • requirements as state of the art suffix tree construction algorithms. A suffix tree...
  • DRIMust

  • Referenced in 1 article [sw29654]
  • discovering rank imbalanced motifs using suffix trees. Cellular regulation mechanisms that involve proteins and other ... minimum hypergeometric statistical framework and uses suffix trees for an efficient enumeration of motif candidates...
  • SplitMEM

  • Referenced in 1 article [sw30182]
  • explore deep topological relationships between suffix trees and compressed de Bruijn graphs and introduce ... given maximum genome size. We introduce suffix skips to traverse several suffix links simultaneously...
  • strmat

  • Referenced in 1 article [sw15337]
  • algorithm, on the use of suffix trees, and the search for repeat patterns under several...
  • PST

  • Referenced in 1 article [sw16272]
  • analysing state sequences with probabilistic suffix trees (PST), the construction that stores variable length Markov...
  • eWAP-mine

  • Referenced in 1 article [sw01470]
  • tree by recursively reconstructing intermediate trees, starting with suffix sequences and ending with prefix sequences ... need for reconstructing intermediate conditional WAP-trees...
  • GAP

  • Referenced in 2404 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • LEDA

  • Referenced in 244 articles [sw00509]
  • In the core computer science areas -- data structures...
  • MapReduce

  • Referenced in 207 articles [sw00546]
  • MapReduce is a new parallel programming model initially...
  • R

  • Referenced in 6593 articles [sw00771]
  • R is a language and environment for statistical...
  • TSPLIB

  • Referenced in 628 articles [sw00983]
  • TSPLIB is a library of sample instances for...
  • ViDE

  • Referenced in 2 articles [sw01537]
  • ViDE: A visual data extraction environment for the...
  • MultiProt

  • Referenced in 2 articles [sw01720]
  • MultiProt -- A multiple protein structural alignment algorithm...
  • MPICH-G2

  • Referenced in 35 articles [sw02373]
  • MPICH-G2: A grid-enabled implementation of the...
  • SVMlight

  • Referenced in 242 articles [sw04076]
  • Description (homepage): SVMlight is an implementation of Vapnik...