• FlipCut

  • Referenced in 2 articles [sw08374]
  • polynomial time. In computational phylogenetics, supertree methods provide a way to reconstruct larger clades ... input. In particular, there exist methods based on encoding the input trees in a matrix...
  • FastRFS

  • Referenced in 1 article [sw29617]
  • current supertree method has sufficient accuracy and scalability to provide good accuracy on the large ... datasets that supertree methods were designed for, containing thousands of species and many subset trees...
  • CLANN

  • Referenced in 1 article [sw23047]
  • information through supertree analyses. Clann has been developed in order to provide methods of investigating...
  • L.U.St

  • Referenced in 1 article [sw29608]
  • overlapping trees to generate a synthesis that provides a high level perspective that cannot ... attained from the inspection of individual phylogenies. Supertrees can be seen as meta-analytical tools ... supertree, given a set of input trees, performs heuristic searches to look for the supertree ... implementation of a supertree method, it has clearly understood properties, and provides several advantages over...
  • PhySIC

  • Referenced in 8 articles [sw08376]
  • paper focuses on veto supertree methods; i.e., methods that aim at producing a conservative synthesis ... trees. We propose desirable properties that a supertree should satisfy in this framework, namely ... property (PI). The former requires that the supertree does not contain relationships that contradict ... given rooted supertree. Moreover, we introduce the PhySIC method (PHYlogenetic Signal with Induction...
  • supersmartR

  • Referenced in 1 article [sw28959]
  • method using both the supermatrix and supertree approach. supersmartR is a project aimed at providing...
  • EPoS

  • Referenced in 4 articles [sw08375]
  • phylogenetic analysis, visualization and data management. It provides a plugin-based system that integrates ... ability to easily incorporate new methods, functions and visualizations. EPoS ships with persistent data management ... algorithms and a multitude of tree visualization methods and layouts. Implemented algorithms cover distance-based ... construction, consensus trees and various graph-based supertree methods. The rendering system can be customized...
  • SIESTA

  • Referenced in 1 article [sw29618]
  • trees. Background: Many supertree estimation and multi-locus species tree estimation methods compute trees ... solutions in polynomial time. Several phylogenomic estimation methods, such as ASTRAL, the MDC algorithm ... this approach. Results: We present SIESTA, a method that can be combined with these dynamic ... search space. As a result, SIESTA provides multiple capabilities, including: (1) counting the number...
  • Gringo

  • Referenced in 94 articles [sw04630]
  • This document provides an introduction to the Answer...
  • Gecode

  • Referenced in 60 articles [sw06272]
  • Gecode is a toolkit for developing constraint-based...
  • Notung

  • Referenced in 12 articles [sw08917]
  • NOTUNG: A Program for Dating Gene Duplications and...