
iBATCGH
 Referenced in 1 article
[sw19388]
 Through the specification of a measurement error model we relate the gene expression levels ... observed surrogate CGH measurement via a hidden Markov model. Selection of relevant associations is performed...

pyunicorn
 Referenced in 3 articles
[sw19314]
 models for spatial networks, networks of interacting networks, nodeweighted statistics or network surrogates. Additionally...

svaseq
 Referenced in 3 articles
[sw14010]
 experiments. These sources of noise must be modeled and removed to accurately measure biological variability ... performing highthroughput genomic analysis. We introduced surrogate variable analysis (sva) for estimating these artifacts...

surrosurv
 Referenced in 1 article
[sw18170]
 evaluation of surrogate endpoints when both the surrogate and the true endpoint are failure time ... href=”http://dx.doi.org/10.1111/14679876.00244”>doi:10.1111/14679876.00244> with a copula model (Clayton, Plackett, Hougaard) at the first step...

MedRoc
 Referenced in 1 article
[sw25034]
 either categorical or continuous in nature. Multiple surrogate (response) variables are allowed for the same ... major features, the editor, choice of ROC model, and the ability to handle continuous data...

Whittle Surrogate
 Referenced in 1 article
[sw22532]
 Whittle Surrogate, MATLAB Central File Exchange 40188. Generates a symbol sequence with a specified transition ... conditioned only on the present state the model is called a Markov chain ... transition probabilities in matrix form. Given the model one may wish to compute the likelihood ... refer to this simulated data as surrogate data. The defining feature of surrogate data...

EMBERS
 Referenced in 1 article
[sw27603]
 societal significant societal events from open source surrogates. We describe the design, implementation, and evaluation ... outline the system architecture of EMBERS, individual models that leverage specific data sources...

VARD
 Referenced in 1 article
[sw14221]
 Determination (ARD) [2,3] to Poisson noise models with Beer’s law. The key advantage ... algorithms in the demo use separable surrogates which reduce the algorithms to parallel line searches...

ANSYS
 Referenced in 601 articles
[sw00044]
 ANSYS offers a comprehensive software suite that spans...

ARfit
 Referenced in 33 articles
[sw00046]
 ARfit is a collection of Matlab modules for...

BARON
 Referenced in 292 articles
[sw00066]
 BARON is a computational system for solving nonconvex...

hypre
 Referenced in 231 articles
[sw00426]
 hypre is a software library for the solution...

JMP
 Referenced in 46 articles
[sw00476]
 For more than 20 years, JMP statistical discovery...

KNITRO
 Referenced in 159 articles
[sw00490]
 KNITRO is a solver for nonlinear optimization. It...

LAPACK
 Referenced in 1544 articles
[sw00503]
 LAPACK is written in Fortran 90 and provides...

LGO
 Referenced in 82 articles
[sw00516]
 The program system LGO serves to solve global...

Mathematica
 Referenced in 5383 articles
[sw00554]
 Almost any workflow involves computing results, and that...

Matlab
 Referenced in 10918 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

NEWUOA
 Referenced in 74 articles
[sw00618]
 NEWUOA is a software developped by M.J.D. Powell...