• BaySICS

  • Referenced in 1 article [sw32670]
  • technological and theoretical advances including the use of ancient DNA. Approximate Bayesian computation (ABC) stands ... most promising methods due to its simple theoretical fundament and exceptional flexibility. However, limited availability ... analyses by means of coalescent simulations from DNA sequence data. It estimates historical demographic population...
  • PDB-REPRDB

  • Referenced in 5 articles [sw26865]
  • system was moved to the Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science ... which are excluded (a) DNA and RNA data, (b) theoretically modeled data, (c) short chains...
  • GOSim

  • Referenced in 5 articles [sw08204]
  • availability of high throughput data, such as DNA microarray data, researchers are capable of producing ... similarity of genes based on various information theoretic similarity concepts for GO terms. GOSim extends ... some lately developed diffusion kernel techniques to compute similarities between GO terms (see references...
  • PAMA

  • Referenced in 1 article [sw02545]
  • String matching is a fundamental operation in computer science, and its performance has great impact ... many applications including database query, text processing, DNA and protein sequence analysis. In this paper ... faster shifting during the string matching process. Theoretically, we prove that from the same alignment...
  • kTAM

  • Referenced in 1 article [sw22257]
  • Computational modelling of the kinetic tile assembly model using a rule-based approach. The (abstract ... DNA self-assembly systems. It employs the use of so-called DNA-tiles, which ... abstractions of experimentally achievable DNA nanostructure complexes with similar inter-matching behaviours. To this ... about half-dozen different experimental implementations of DNA tiles and their sub-sequent algorithmic assembly...
  • Magma

  • Referenced in 2720 articles [sw00540]
  • Computer algebra system (CAS). Magma is a large...
  • Maple

  • Referenced in 4933 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 5714 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 11547 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 7694 articles [sw00771]
  • R is a language and environment for statistical...
  • SageMath

  • Referenced in 1511 articles [sw00825]
  • Sage (SageMath) is free, open-source math software...
  • CUDA

  • Referenced in 1138 articles [sw03258]
  • The NVIDIA® CUDA® Toolkit provides a comprehensive development...
  • SPIN

  • Referenced in 699 articles [sw03455]
  • Spin is a popular open-source software tool...
  • SDPT3

  • Referenced in 597 articles [sw04009]
  • This software is designed to solve conic programming...
  • UCI-ml

  • Referenced in 2940 articles [sw04074]
  • UC Irvine Machine Learning Repository. We currently maintain...
  • CPLEX

  • Referenced in 2503 articles [sw04082]
  • IBM® ILOG® CPLEX® offers C, C++, Java, .NET...
  • LIBSVM

  • Referenced in 1054 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • XPPAUT

  • Referenced in 375 articles [sw05543]
  • XPPAUT is software for the analysis and simulation...
  • GAUSSIAN

  • Referenced in 170 articles [sw06118]
  • Gaussian is an electronic structure program, used by...