• SparseMatrix

  • Referenced in 320 articles [sw04629]
  • fluid dynamics, model reduction, electromagnetics, semiconductor devices, thermodynamics, materials, acoustics, computer graphics/vision, robotics/kinematics, and other...
  • MPDATA

  • Referenced in 56 articles [sw00596]
  • schemes for evaluating the advection of nonnegative thermodynamic variables (such as liquid water or water...
  • GRI-Mech 3.0

  • Referenced in 25 articles [sw07056]
  • selection, and examining the sensitivity to the thermodynamics...
  • LUDWIG

  • Referenced in 21 articles [sw02229]
  • present a novel scheme for the thermodynamically consistent simulation of wetting phenomena, in the presence...
  • GLOPEQ

  • Referenced in 15 articles [sw07709]
  • solutions which can then be verified for thermodynamic stability by solving (S). Two key features...
  • ProTherm

  • Referenced in 7 articles [sw16247]
  • Protherm, version 4.0: thermodynamic database for proteins and mutants. Release 4.0 of ProTherm, thermodynamic database ... first version) of several thermodynamic parameters along with experimental methods and conditions, and structural, functional ... structural information of proteins is connected with thermodynamic data through links between entries in Protein...
  • GENERIC

  • Referenced in 12 articles [sw08150]
  • GENERIC allows for an efficient derivation of thermodynamically consistent coupled field equations, while revealing additional...
  • CONTRAfold

  • Referenced in 6 articles [sw17117]
  • which rely on thousands of experimentally-measured thermodynamic parameters, SCFGs use fully-automated statistical learning ... most of the features found in typical thermodynamic models, CONTRAfold achieves the highest single sequence ... thus closes the gap between probabilistic and thermodynamic models, demonstrating that statistical learning procedures provide ... effective alternative to empirical measurement of thermodynamic parameters for RNA secondary structure prediction...
  • IMD

  • Referenced in 6 articles [sw00438]
  • integrators for the simulation of the various thermodynamic ensembles, options that allow to shear...
  • RNAsoft

  • Referenced in 6 articles [sw09073]
  • structure. The tools are based on standard thermodynamic models of RNA secondary structure formation. RNAsoft...
  • ViennaRNA

  • Referenced in 6 articles [sw10504]
  • which calculates base pair probabilities in the thermodynamic ensemble, and the suboptimal folding algorithm...
  • jacobi2.0

  • Referenced in 4 articles [sw06052]
  • generalized `Poisson’ bracket. Novel frameworks for nonequilibrium thermodynamics have been established, which require that ... reversible part of motion of thermodynamically admissible models is described by Poisson brackets satisfying...
  • CRYSTAL09

  • Referenced in 4 articles [sw08388]
  • atomic orbitals, the elastic and the thermodynamic Gruneisen parameters of silver azide, which decrease with ... state of crystals and for the thermodynamic models used are, respectively...
  • Cantera

  • Referenced in 3 articles [sw15111]
  • Object-Oriented Software Toolkit for Chemical Kinetics, Thermodynamics, and Transport Processes. Cantera is a suite ... software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes. Cantera provides types...
  • GLANUSIT

  • Referenced in 4 articles [sw00355]
  • This highly nonlinear model governs the coupled thermodynamical and hydrodynamical processes. The global algorithm mainly...
  • ISIM

  • Referenced in 4 articles [sw01100]
  • ISIM. ISIM is package that simulates the thermodynamic ensemble of ions around a macromolecule using...
  • RNAstructure

  • Referenced in 2 articles [sw17133]
  • oligonucleotides. RNA secondary structure prediction, using thermodynamics, can be used to develop hypotheses about ... secondary structure prediction and analysis. It uses thermodynamics and utilizes the most recent...
  • ChemSage

  • Referenced in 2 articles [sw19061]
  • mixing properties. These are the calculation of thermodynamic functions, heterogeneous phase equilibria, and steady-state ... simulation of simple multistage reactors. The thermodynamic functions module calculates specific heat, enthalpy, entropy...
  • SimulationX

  • Referenced in 3 articles [sw04201]
  • multibody systems, power transmission, hydraulics, pneumatics, thermodynamics, electrics, electrical drives, magnetics as well as controls...
  • OPPDIF

  • Referenced in 3 articles [sw15840]
  • CHEMKIN package evaluates chemical reaction rates and thermodynamic and transport properties...