• SparseMatrix

  • Referenced in 363 articles [sw04629]
  • fluid dynamics, model reduction, electromagnetics, semiconductor devices, thermodynamics, materials, acoustics, computer graphics/vision, robotics/kinematics, and other...
  • MPDATA

  • Referenced in 57 articles [sw00596]
  • schemes for evaluating the advection of nonnegative thermodynamic variables (such as liquid water or water...
  • GRI-Mech 3.0

  • Referenced in 26 articles [sw07056]
  • selection, and examining the sensitivity to the thermodynamics...
  • LUDWIG

  • Referenced in 22 articles [sw02229]
  • present a novel scheme for the thermodynamically consistent simulation of wetting phenomena, in the presence...
  • GLOPEQ

  • Referenced in 15 articles [sw07709]
  • solutions which can then be verified for thermodynamic stability by solving (S). Two key features...
  • GENERIC

  • Referenced in 13 articles [sw08150]
  • GENERIC allows for an efficient derivation of thermodynamically consistent coupled field equations, while revealing additional...
  • ProTherm

  • Referenced in 7 articles [sw16247]
  • Protherm, version 4.0: thermodynamic database for proteins and mutants. Release 4.0 of ProTherm, thermodynamic database ... first version) of several thermodynamic parameters along with experimental methods and conditions, and structural, functional ... structural information of proteins is connected with thermodynamic data through links between entries in Protein...
  • Cantera

  • Referenced in 8 articles [sw15111]
  • Object-Oriented Software Toolkit for Chemical Kinetics, Thermodynamics, and Transport Processes. Cantera is a suite ... software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes. Cantera provides types...
  • CONTRAfold

  • Referenced in 6 articles [sw17117]
  • which rely on thousands of experimentally-measured thermodynamic parameters, SCFGs use fully-automated statistical learning ... most of the features found in typical thermodynamic models, CONTRAfold achieves the highest single sequence ... thus closes the gap between probabilistic and thermodynamic models, demonstrating that statistical learning procedures provide ... effective alternative to empirical measurement of thermodynamic parameters for RNA secondary structure prediction...
  • ViennaRNA

  • Referenced in 7 articles [sw10504]
  • which calculates base pair probabilities in the thermodynamic ensemble, and the suboptimal folding algorithm...
  • IMD

  • Referenced in 6 articles [sw00438]
  • integrators for the simulation of the various thermodynamic ensembles, options that allow to shear...
  • RNAsoft

  • Referenced in 6 articles [sw09073]
  • structure. The tools are based on standard thermodynamic models of RNA secondary structure formation. RNAsoft...
  • jacobi2.0

  • Referenced in 4 articles [sw06052]
  • generalized `Poisson’ bracket. Novel frameworks for nonequilibrium thermodynamics have been established, which require that ... reversible part of motion of thermodynamically admissible models is described by Poisson brackets satisfying...
  • CRYSTAL09

  • Referenced in 4 articles [sw08388]
  • atomic orbitals, the elastic and the thermodynamic Gruneisen parameters of silver azide, which decrease with ... state of crystals and for the thermodynamic models used are, respectively...
  • IVTANTHERMO

  • Referenced in 2 articles [sw18575]
  • IVTANTHERMO for Windows – database on thermodynamic properties and related software. A new version ... software package IVTANTHERMO for Windows intended for thermodynamic modelling of complex chemically reacting systems ... package includes an extensive database on thermodynamic properties of individual substances, programs for the database ... allows the calculation of equilibrium composition and thermodynamic properties of the system to be examined...
  • GLANUSIT

  • Referenced in 4 articles [sw00355]
  • This highly nonlinear model governs the coupled thermodynamical and hydrodynamical processes. The global algorithm mainly...
  • ISIM

  • Referenced in 4 articles [sw01100]
  • ISIM. ISIM is package that simulates the thermodynamic ensemble of ions around a macromolecule using...
  • PoPMuSiC

  • Referenced in 4 articles [sw16879]
  • server that predicts the thermodynamic stability changes caused by single site mutations in proteins, using...
  • SmoothSTF

  • Referenced in 2 articles [sw10246]
  • accurate and smooth approximation of standard thermodynamic functions. A method is proposed for the calculation ... approximations of standard thermodynamic functions. The method is consistent with the physical properties of standard ... thermodynamic functions. This means that the approximation functions are, in contrast to the hitherto used...
  • RNAstructure

  • Referenced in 2 articles [sw17133]
  • oligonucleotides. RNA secondary structure prediction, using thermodynamics, can be used to develop hypotheses about ... secondary structure prediction and analysis. It uses thermodynamics and utilizes the most recent...