• ML-KNN

  • Referenced in 52 articles [sw12923]
  • real-world multi-label learning problems, i.e. Yeast gene functional analysis, natural scene classification...
  • Euk-mPLoc

  • Referenced in 40 articles [sw26860]
  • focused on the proteins in budding yeast only. For most existing predictors, the multiple-site...
  • BioProspector

  • Referenced in 27 articles [sw09375]
  • DBTBS collection of promoters, and motifs from yeast expression data...
  • iRO-3wPseKNC

  • Referenced in 13 articles [sw27669]
  • proposed to identify DNA replication origins of yeast species, they could only be used ... successfully capture the ’GC asymmetry bias’ of yeast species reported by experimental observations. Hence ... cover the entire replication regions of yeast species, we develop a new predictor called ... validations on the benchmark datasets from four yeast species (Saccharomyces cerevisiae, Schizosaccharomyces pombe, Kluyveromyces lactis...
  • FatiGO

  • Referenced in 18 articles [sw12318]
  • diverse organisms (human, mouse, fly, worm and yeast) and the TrEMBL/Swissprot GOAnnotations@EBI correspondences from...
  • RSIR

  • Referenced in 15 articles [sw26716]
  • RSIR by applying it to the yeast amino acid starvation data and cell cycle data...
  • PIPE

  • Referenced in 6 articles [sw26869]
  • interactions for any target pair of the yeast Saccharomyces cerevisiae proteins from their primary structure ... sensitivity of 61% for detecting any yeast protein interaction with 89% specificity and an overall ... interaction between YGL227W (vid30) and YMR135C (gid8) yeast proteins. This lead us to the identification ... novel yeast complex that here we term vid30 complex (vid30c). The observed interaction was confirmed...
  • OrthoMCL

  • Referenced in 13 articles [sw29602]
  • seven publicly available genomes (human, fly, worm, yeast, Arabidopsis, the malaria parasite Plasmodium falciparum...
  • Notung

  • Referenced in 12 articles [sw08917]
  • role in the evolution of the maize, yeast, and vertebrate genomes. The use of evolutionary...
  • IsoRank

  • Referenced in 10 articles [sw08324]
  • alignment of PPI networks from five species: yeast, fly, worm, mouse and human. The global...
  • QNet

  • Referenced in 9 articles [sw13845]
  • comparison of protein complexes, by querying known yeast complexes against a fly protein interaction network...
  • GeneMANIA

  • Referenced in 9 articles [sw30022]
  • MouseFunc I benchmark and a new yeast function prediction benchmark; it is robust to redundant...
  • ConsensusPathDB

  • Referenced in 6 articles [sw29342]
  • With 155 432 human, 194 480 yeast and 13 648 mouse complex functional interactions (originating ... databases on human and eight databases on yeast and mouse interactions each), ConsensusPathDB currently constitutes...
  • SGN Sim

  • Referenced in 8 articles [sw29325]
  • mechanism and a simulation based on the yeast transcriptional network. AVAILABILITY: SGNSim program, instructions...
  • SW1PerS

  • Referenced in 5 articles [sw17206]
  • list of genes from data on the Yeast metabolic cycle which are highly-ranked only ... periodic expression profiles. In data from the Yeast cell cycle SW1PerS identifies genes not preferred...
  • SPINE

  • Referenced in 5 articles [sw29309]
  • method by applying it to a yeast subnetwork that is involved in mating. In cross ... Next, we apply SPINE to the entire yeast network to predict protein effects and reconstruct...
  • SHARCGS

  • Referenced in 7 articles [sw29573]
  • inserts from three eukaryotic species, on two yeast chromosomes, and on two bacterial genomes (Haemophilus...
  • PreSPI

  • Referenced in 5 articles [sw17424]
  • interacting set of protein pairs in yeast and an artificially generated non-interacting...
  • MI-GRAAL

  • Referenced in 2 articles [sw08318]
  • large regions of global network similarity in yeast and human. Motivation: High-throughput methods ... proteins in the baker’s yeast high-confidence PPI network participate in such a subnetwork ... first demonstration that species as diverse as yeast and human contain so large, continuous regions ... predict functions of un-annotated proteins in yeast, human and bacteria validating our predictions...
  • SPINAL

  • Referenced in 4 articles [sw08319]
  • algorithm on the PPI networks of yeast, fly, human, and worm. We show that based...