bioperl

The bioperl toolkit: Perl modules for the life sciences. BioPerl is a toolkit of perl modules useful in building bioinformatics solutions in Perl. It is built in an object-oriented manner so that many modules depend on each other to achieve a task. The collection of modules in the bioperl-live repository consist of the core of the functionality of bioperl. Additionally auxiliary modules for creating graphical interfaces (bioperl-gui), persistent storage in RDMBS (bioperl-db), running and parsing the results from hundreds of bioinformatics applications (Run package), software to automate bioinformatic analyses (bioperl-pipeline) are all available as Git modules in our repository.

Keywords for this software

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References in zbMATH (referenced in 9 articles )

Showing results 1 to 9 of 9.
Sorted by year (citations)

  1. Keith, Jonathan M. (ed.): Bioinformatics. Volume I. Data, sequence analysis, and evolution (2017)
  2. Wicke, Kristina; Fischer, Mareike: Comparing the rankings obtained from two biodiversity indices: the fair proportion index and the Shapley value (2017)
  3. Carugo, Oliviero (ed.); Eisenhaber, Frank (ed.): Data mining techniques for the life sciences (2016)
  4. Singh, Gautam B.: Fundamentals of bioinformatics and computational biology. Methods and exercises in MATLAB (2015)
  5. Giraud, Mathieu; Varré, Jean-Stéphane: Parallel position weight matrices algorithms (2011) ioport
  6. Merelo Guervós, Juan Julián; Castillo, Pedro A.; Alba, Enrique: Algorithm::Evolutionary, a flexible Perl module for evolutionary computation (2010) ioport
  7. Jithesh, P.V.; Donachy, P.; Harmer, T.; Kelly, N.; Perrott, R.; Wasnik, S.; Johnston, J.; McCurley, M.; Townsley, M.; McKee, S.: GeneGrid: Architecture, implementation and application (2006)
  8. Jithesh, P.V.; Donachy, P.; Harmer, T.; Kelly, N.; Perrott, R.; Wasnik, S.; Johnston, J.; McCurley, M.; Townsley, M.; McKee, S.: GeneGrid: Architecture, implementation and application (2006) ioport
  9. Llabrés, Mercè; Rocha, Jairo; Rosselló, Francesc; Valiente, Gabriel: On the ancestral compatibility of two phylogenetic trees with nested taxa (2006)