UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated. Chimera includes complete documentation and several tutorials, and can be downloaded free of charge for academic, government, non-profit, and personal use. Chimera is developed by the Resource for Biocomputing, Visualization, and Informatics, funded by the National Institutes of Health (NIGMS P41-GM103311).

References in zbMATH (referenced in 21 articles )

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  1. Carr, Hamish (ed.); Garth, Christoph (ed.); Weinkauf, Tino (ed.): Topological methods in data analysis and visualization IV. Theory, algorithms, and applications. Selected papers based on the presentations at the TopoInVis workshop, Annweiler, Germany, 2015 (2017)
  2. Shivashankar, Nithin; Natarajan, Vijay: Efficient software for programmable visual analysis using Morse-Smale complexes (2017)
  3. Janaina Cruz Pereira, Ernesto Raul Caffarena, Cicero dos Santos: Boosting Docking-based Virtual Screening with Deep Learning (2016) arXiv
  4. Burkowski, Forbes J.: Computational and visualization techniques for structural bioinformatics using Chimera (2015)
  5. Burkowski, Forbes; Cheung, Yuen-Lam; Wolkowicz, Henry: Efficient use of semidefinite programming for selection of rotamers in protein conformations (2014)
  6. Dorn, Márcio; Buriol, Luciana S.; Lamb, Luis C.: MOIRAE: a computational strategy to extract and represent structural information from experimental protein templates (2014) ioport
  7. Tang, H.S.; Qu, K.; Wu, X.G.: An overset grid method for integration of fully 3D fluid dynamics and geophysics fluid dynamics models to simulate multiphysics coastal ocean flows (2014)
  8. Bajaj, Chandrajit; Bauer, Benedikt; Bettadapura, Radhakrishna; Vollrath, Antje: Nonuniform Fourier transforms for rigid-body and multidimensional rotational correlations (2013)
  9. English, R.Elliot; Qiu, Linhai; Yu, Yue; Fedkiw, Ronald: An adaptive discretization of incompressible flow using a multitude of moving Cartesian grids (2013)
  10. Falissard, F.: Genuinely multi-dimensional explicit and implicit generalized Shapiro filters for weather forecasting, computational fluid dynamics and aeroacoustics (2013)
  11. Chang, Kai-Chun: Revealing - 1 programmed ribosomal frameshifting mechanisms by single-molecule techniques and computational methods (2012)
  12. Hymavati; Kumar, Vivek; Sobhia, M.Elizabeth: Implication of crystal water molecules in inhibitor binding at ALR2 active site (2012)
  13. Lima, Angélica Nakagawa; Philot, Eric Allison; Perahia, David; Braz, Antonio Sérgio Kimus; Scott, Luis P.B.: GANM: A protein-ligand docking approach based on genetic algorithm and normal modes (2012)
  14. Linsen, Lars (ed.); Hagen, Hans (ed.); Hamann, Bernd (ed.); Hege, Hans-Christian (ed.): Visualization in Medicine and Life Sciences II. Progress and New Challenges. Selected papers based on the presentations at the second international workshop, VMLS, Bremerhaven, Germany, June 22--24, 2009 (2012)
  15. Boisson, Jean-Charles; Jourdan, Laetitia; Talbi, El-Ghazali; Horvath, Dragos: Single- and multi-objective cooperation for the flexible docking problem (2010) ioport
  16. Barahona, Pedro; Krippahl, Ludwig: Constraint programming in structural bioinformatics (2008)
  17. Barea, Fernanda; Tessaro, Simone; Bonatto, Diego: In silico analyses of a new group of fungal and plant RecQ4-homologous proteins (2008)
  18. Tantar, Alexandru-Adrian; Melab, Nouredine; Talbi, El-Ghazali: A grid-based genetic algorithm combined with an adaptive simulated annealing for protein structure prediction (2008)
  19. Eargle, John; Luthey-Schulten, Zaida: Visualizing the dual space of biological molecules (2006)
  20. Watanabe, Yoko; Tsuboi, Hideyuki; Koyama, Michihisa; Kubo, Momoji; Del Carpio, Carlos A.; Broclawik, Ewa; Ichiishi, Eiichiro; Kohno, Masahiro; Miyamoto, Akira: Molecular dynamics study on the ligand recognition by tandem SH3 domains of p47phox, regulating NADPH oxidase activity (2006)

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