Chimera

UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated. Chimera includes complete documentation and several tutorials, and can be downloaded free of charge for academic, government, non-profit, and personal use. Chimera is developed by the Resource for Biocomputing, Visualization, and Informatics, funded by the National Institutes of Health (NIGMS P41-GM103311).


References in zbMATH (referenced in 18 articles )

Showing results 1 to 18 of 18.
Sorted by year (citations)

  1. Janaina Cruz Pereira, Ernesto Raul Caffarena, Cicero dos Santos: Boosting Docking-based Virtual Screening with Deep Learning (2016) arXiv
  2. Burkowski, Forbes J.: Computational and visualization techniques for structural bioinformatics using Chimera (2015)
  3. Dorn, Márcio; Buriol, Luciana S.; Lamb, Luis C.: MOIRAE: a computational strategy to extract and represent structural information from experimental protein templates (2014) ioport
  4. Tang, H.S.; Qu, K.; Wu, X.G.: An overset grid method for integration of fully 3D fluid dynamics and geophysics fluid dynamics models to simulate multiphysics coastal ocean flows (2014)
  5. Bajaj, Chandrajit; Bauer, Benedikt; Bettadapura, Radhakrishna; Vollrath, Antje: Nonuniform Fourier transforms for rigid-body and multidimensional rotational correlations (2013)
  6. English, R.Elliot; Qiu, Linhai; Yu, Yue; Fedkiw, Ronald: An adaptive discretization of incompressible flow using a multitude of moving Cartesian grids (2013)
  7. Falissard, F.: Genuinely multi-dimensional explicit and implicit generalized Shapiro filters for weather forecasting, computational fluid dynamics and aeroacoustics (2013)
  8. Chang, Kai-Chun: Revealing - 1 programmed ribosomal frameshifting mechanisms by single-molecule techniques and computational methods (2012)
  9. Hymavati; Kumar, Vivek; Sobhia, M.Elizabeth: Implication of crystal water molecules in inhibitor binding at ALR2 active site (2012)
  10. Lima, Angélica Nakagawa; Philot, Eric Allison; Perahia, David; Braz, Antonio Sérgio Kimus; Scott, Luis P.B.: GANM: A protein-ligand docking approach based on genetic algorithm and normal modes (2012)
  11. Linsen, Lars (ed.); Hagen, Hans (ed.); Hamann, Bernd (ed.); Hege, Hans-Christian (ed.): Visualization in Medicine and Life Sciences II. Progress and New Challenges. Selected papers based on the presentations at the second international workshop, VMLS, Bremerhaven, Germany, June 22--24, 2009 (2012)
  12. Boisson, Jean-Charles; Jourdan, Laetitia; Talbi, El-Ghazali; Horvath, Dragos: Single- and multi-objective cooperation for the flexible docking problem (2010) ioport
  13. Barahona, Pedro; Krippahl, Ludwig: Constraint programming in structural bioinformatics (2008)
  14. Barea, Fernanda; Tessaro, Simone; Bonatto, Diego: In silico analyses of a new group of fungal and plant RecQ4-homologous proteins (2008)
  15. Tantar, Alexandru-Adrian; Melab, Nouredine; Talbi, El-Ghazali: A grid-based genetic algorithm combined with an adaptive simulated annealing for protein structure prediction (2008)
  16. Eargle, John; Luthey-Schulten, Zaida: Visualizing the dual space of biological molecules (2006)
  17. Watanabe, Yoko; Tsuboi, Hideyuki; Koyama, Michihisa; Kubo, Momoji; Del Carpio, Carlos A.; Broclawik, Ewa; Ichiishi, Eiichiro; Kohno, Masahiro; Miyamoto, Akira: Molecular dynamics study on the ligand recognition by tandem SH3 domains of p47phox, regulating NADPH oxidase activity (2006)
  18. Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C.; Couch, Gregory S.; Greenblatt, Daniel M.; Meng, Elaine C.; Ferrin, Thomas E.: UCSF chimera - A visualization system for exploratory research and analysis. (2004) ioport


Further publications can be found at: http://www.cgl.ucsf.edu/chimera/docs/morerefs.html