GO::TermFinder-open source software for accessing gene ontology terms associated with a list of genes. Summary: GO::TermFinder comprises a set of object-oriented Perl modules for accessing Gene Ontology (GO) information and evaluating and visualizing the collective annotation of a list of genes to GO terms. It can be used to draw conclusions from microarray and other biological data, calculating the statistical significance of each annotation. GO::TermFinder can be used on any system on which Perl can be run, either as a command line application, in single or batch mode, or as a web-based CGI script. Availability: The full source code and documentation for GO::TermFinder are freely available from http://search.cpan.org/dist/GO-TermFinder/
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References in zbMATH (referenced in 3 articles )
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- Airoldi, Edoardo M.; Wang, Xiaopei; Lin, Xiaodong: Multi-way blockmodels for analyzing coordinated high-dimensional responses (2013)
- Yu, Liang; Gao, Lin; Li, Kui; Zhao, Yi; Chiu, David K.Y.: A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification (2011) ioport
- Yamaguchi, Rui; Imoto, Seiya; Miyano, Satoru: Network-based predictions and simulations by biological state space models: search for drug mode of action (2009) ioport