PSIPRED

The PSIPRED protein structure prediction server. The PSIPRED protein structure prediction server allows users to submit a protein sequence, perform a prediction of their choice and receive the results of the prediction both textually via e-mail and graphically via the web. The user may select one of three prediction methods to apply to their sequence: PSIPRED, a highly accurate secondary structure prediction method; MEMSAT 2, a new version of a widely used transmembrane topology prediction method; or GenTHREADER, a sequence profile based fold recognition method. Availability: Freely available to non-commercial users at http://globin.bio.warwick.ac.uk/psipred/


References in zbMATH (referenced in 14 articles )

Showing results 1 to 14 of 14.
Sorted by year (citations)

  1. Dehzangi, Abdollah; López, Yosvany; Lal, Sunil Pranit; Taherzadeh, Ghazaleh; Michaelson, Jacob; Sattar, Abdul; Tsunoda, Tatsuhiko; Sharma, Alok: PSSM-Suc: accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction (2017)
  2. Nezafat, Navid; Ghasemi, Younes; Javadi, Gholamreza; Khoshnoud, Mohammad Javad; Omidinia, Eskandar: A novel multi-epitope peptide vaccine against cancer: an in silico approach (2014)
  3. Tran, Van Du T.; Chassignet, Philippe; Steyaert, Jean-Marc: On permuted super-secondary structures of transmembrane (\beta)-barrel proteins (2014)
  4. Di Luccio, Eric; Koehl, Patrice: A quality metric for homology modeling: the H-factor (2011) ioport
  5. Hassan, Rohayanti; Othman, Razib M.; Saad, Puteh; Kasim, Shahreen: A compact hybrid feature vector for an accurate secondary structure prediction (2011) ioport
  6. Jackson, Rhydon; Knisley, Debra; McIntosh, Cecilia; Pfeiffer, Phillip: Predicting flavonoid UGT regioselectivity (2011) ioport
  7. Fonseca, Rasmus; Paluszewski, Martin; Winter, Pawel: Protein structure prediction using bee colony optimization metaheuristic (2010) ioport
  8. Lennox, Kristin P.; Dahl, David B.; Vannucci, Marina; Day, Ryan; Tsai, Jerry W.: A Dirichlet process mixture of hidden Markov models for protein structure prediction (2010)
  9. Green, James R.; Korenberg, Michael J.; Aboul-Magd, Mohammed O.: PCI-SS: MISO dynamic nonlinear protein secondary structure prediction (2009) ioport
  10. Ramana, Jayashree; Gupta, Dinesh: Lipocalinpred: a SVM-based method for prediction of lipocalins (2009) ioport
  11. Sun, Weitao; He, Jing: Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures (2009) ioport
  12. Ramos, Marco A.; Mares, Rosa E.; Magaña, Paloma D.; Ortega, Joaquín E.; Cornejo-Bravo, Jose M.: In silico identification of the protein disulfide isomerase family from a protozoan parasite (2008)
  13. Chung, Yun-Sheng; Lu, Chin Lung; Tang, Chuan Yi: Constrained sequence alignment: A general model and the hardness results (2007)
  14. Inoue, Yasuhito; Ikeda, Masami; Shimizu, Toshio: Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern (2004)