Lamarc 2.0: maximum likelihood and Bayesian estimation of population parameters. LAMARC is a program which estimates population-genetic parameters such as population size, population growth rate, recombination rate, and migration rates. It approximates a summation over all possible genealogies that could explain the observed sample, which may be sequence, SNP, microsatellite, or electrophoretic data. LAMARC and its sister program Migrate are successor programs to the older programs Coalesce, Fluctuate, and Recombine, which are no longer being supported. The programs are memory-intensive but can run effectively on workstations; we support a variety of operating systems.
Keywords for this software
References in zbMATH (referenced in 6 articles )
Showing results 1 to 6 of 6.
- Gavryushkin, Alex; Whidden, Chris; Matsen, Frederick A.: The combinatorics of discrete time-trees: theory and open problems (2018)
- Kimmel, Marek; Wojdyła, Tomasz: Genetic demographic networks: mathematical model and applications (2016)
- Amaris, Armando J.R.; Cox, Murray P.: A flexible theoretical representation for the temporal dynamics of structured populations as paths on polytope complexes (2015)
- Leviyang, Sivan: Sampling HIV intrahost genealogies based on a model of acute stage CTL response (2012)
- Leviyang, Sivan: The coalescence of intrahost HIV lineages under symmetric CTL attack (2012)
- Kuhner, Mary K.: Lamarc 2.0: Maximum likelihood and Bayesian estimation of population parameters (2006) ioport