DIALIGN

DIALIGN: multiple DNA and protein sequence alignment at BiBiServ. DIALIGN is a widely used software tool for multiple DNA and protein sequence alignment. The program combines local and global alignment features and can therefore be applied to sequence data that cannot be correctly aligned by more traditional approaches. DIALIGN is available online through Bielefeld Bioinformatics Server (BiBiServ). The downloadable version of the program offers several new program features. To compare the output of different alignment programs, we developed the program AltAVisT. Our software is available at http://bibiserv.TechFak.Uni-Bielefeld.DE/dialign/.

Keywords for this software

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References in zbMATH (referenced in 33 articles , 1 standard article )

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  1. Prohaska, Sonja J.; Berkemer, Sarah J.; Gärtner, Fabian; Gatter, Thomas; Retzlaff, Nancy; Höner zu Siederdissen, Christian; Stadler, Peter F.: Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem (2018)
  2. Retzlaff, Nancy; Stadler, Peter F.: Partially local multi-way alignments (2018)
  3. Fiscon, Giulia; Weitschek, Emanuel: String-matching and alignment algorithms for finding motifs in NGS data (2017)
  4. Keith, Jonathan M. (ed.): Bioinformatics. Volume I. Data, sequence analysis, and evolution (2017)
  5. Nguyen, Ken; Guo, Xuan; Pan, Yi: Multiple biological sequence alignment. Scoring functions, algorithms and evaluation (2016)
  6. Yasin, Layal: Multiple sequence alignment using external sources of information (2016)
  7. Axelson-Fisk, Marina: Comparative gene finding. Models, algorithms and implementation (2015)
  8. Mora-Gutiérrez, Roman Anselmo; Lárraga-Ramírez, María E.; Rincón-García, Eric A.; Ponsich, Antonin; Ramírez-Rodríguez, Javier: Adaptation of the method of musical composition for solving the multiple sequence alignment problem (2015)
  9. Federico, Maria; Peterlongo, Pierre; Pisanti, Nadia; Sagot, Marie-France: \textscRime: repeat identification (2014)
  10. Daugelaite, Jurate; O’Driscoll, Aisling; Sleator, Roy D.: An overview of multiple sequence alignments and cloud computing in bioinformatics (2013)
  11. Didier, Gilles; Corel, Eduardo; Laprevotte, Ivan; Grossmann, Alex; Landès-Devauchelle, Claudine: Variable length local decoding and alignment-free sequence comparison (2012)
  12. Saeed, Fahad; Perez-Rathke, Alan; Gwarnicki, Jaroslaw; Berger-Wolf, Tanya; Khokhar, Ashfaq: A high performance multiple sequence alignment system for pyrosequencing reads from multiple reference genomes (2012) ioport
  13. Schmidt, Andrew G.; Datta, Siddhartha; Mendon, Ashwin A.; Sass, Ron: Investigation into scaling I/O bound streaming applications productively with an all-FPGA cluster (2012) ioport
  14. Di Luccio, Eric; Koehl, Patrice: A quality metric for homology modeling: the H-factor (2011) ioport
  15. Otto, Wolfgang; Stadler, Peter F.; Prohaska, Sonja J.: Phylogenetic footprinting and consistent sets of local aligments (2011)
  16. Hara, Toshihide; Sato, Keiko; Ohya, Masanori: MTRAP: pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of residues (2010) ioport
  17. Kim, Jaebum; Sinha, Saurabh: Towards realistic benchmarks for multiple alignments of non-coding sequences (2010) ioport
  18. Kryukov, Kirill; Saitou, Naruya: MISHIMA - a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data (2010) ioport
  19. Subramanian, Amarendran R.; Hiran, Suvrat; Steinkamp, Rasmus; Meinicke, Peter; Corel, Eduardo; Morgenstern, Burkhard: DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS (2010) ioport
  20. Liang, Chunguang; Schmid, Alexander; López-Sánchez, María José; Moya, Andres; Gross, Roy; Bernhardt, Jörg; Dandekar, Thomas: JANE: efficient mapping of prokaryotic ests and variable length sequence reads on related template genomes (2009) ioport

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