DIALIGN
DIALIGN: multiple DNA and protein sequence alignment at BiBiServ. DIALIGN is a widely used software tool for multiple DNA and protein sequence alignment. The program combines local and global alignment features and can therefore be applied to sequence data that cannot be correctly aligned by more traditional approaches. DIALIGN is available online through Bielefeld Bioinformatics Server (BiBiServ). The downloadable version of the program offers several new program features. To compare the output of different alignment programs, we developed the program AltAVisT. Our software is available at http://bibiserv.TechFak.Uni-Bielefeld.DE/dialign/.
Keywords for this software
References in zbMATH (referenced in 33 articles , 1 standard article )
Showing results 1 to 20 of 33.
Sorted by year (- Prohaska, Sonja J.; Berkemer, Sarah J.; Gärtner, Fabian; Gatter, Thomas; Retzlaff, Nancy; Höner zu Siederdissen, Christian; Stadler, Peter F.: Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem (2018)
- Retzlaff, Nancy; Stadler, Peter F.: Partially local multi-way alignments (2018)
- Fiscon, Giulia; Weitschek, Emanuel: String-matching and alignment algorithms for finding motifs in NGS data (2017)
- Keith, Jonathan M. (ed.): Bioinformatics. Volume I. Data, sequence analysis, and evolution (2017)
- Nguyen, Ken; Guo, Xuan; Pan, Yi: Multiple biological sequence alignment. Scoring functions, algorithms and evaluation (2016)
- Yasin, Layal: Multiple sequence alignment using external sources of information (2016)
- Axelson-Fisk, Marina: Comparative gene finding. Models, algorithms and implementation (2015)
- Mora-Gutiérrez, Roman Anselmo; Lárraga-Ramírez, María E.; Rincón-García, Eric A.; Ponsich, Antonin; Ramírez-Rodríguez, Javier: Adaptation of the method of musical composition for solving the multiple sequence alignment problem (2015)
- Federico, Maria; Peterlongo, Pierre; Pisanti, Nadia; Sagot, Marie-France: \textscRime: repeat identification (2014)
- Daugelaite, Jurate; O’Driscoll, Aisling; Sleator, Roy D.: An overview of multiple sequence alignments and cloud computing in bioinformatics (2013)
- Didier, Gilles; Corel, Eduardo; Laprevotte, Ivan; Grossmann, Alex; Landès-Devauchelle, Claudine: Variable length local decoding and alignment-free sequence comparison (2012)
- Saeed, Fahad; Perez-Rathke, Alan; Gwarnicki, Jaroslaw; Berger-Wolf, Tanya; Khokhar, Ashfaq: A high performance multiple sequence alignment system for pyrosequencing reads from multiple reference genomes (2012) ioport
- Schmidt, Andrew G.; Datta, Siddhartha; Mendon, Ashwin A.; Sass, Ron: Investigation into scaling I/O bound streaming applications productively with an all-FPGA cluster (2012) ioport
- Di Luccio, Eric; Koehl, Patrice: A quality metric for homology modeling: the H-factor (2011) ioport
- Otto, Wolfgang; Stadler, Peter F.; Prohaska, Sonja J.: Phylogenetic footprinting and consistent sets of local aligments (2011)
- Hara, Toshihide; Sato, Keiko; Ohya, Masanori: MTRAP: pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of residues (2010) ioport
- Kim, Jaebum; Sinha, Saurabh: Towards realistic benchmarks for multiple alignments of non-coding sequences (2010) ioport
- Kryukov, Kirill; Saitou, Naruya: MISHIMA - a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data (2010) ioport
- Subramanian, Amarendran R.; Hiran, Suvrat; Steinkamp, Rasmus; Meinicke, Peter; Corel, Eduardo; Morgenstern, Burkhard: DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS (2010) ioport
- Liang, Chunguang; Schmid, Alexander; López-Sánchez, María José; Moya, Andres; Gross, Roy; Bernhardt, Jörg; Dandekar, Thomas: JANE: efficient mapping of prokaryotic ests and variable length sequence reads on related template genomes (2009) ioport