PGEToolbox: A Matlab Toolbox for Population Genetics and Evolution. Assessing genetic diversity within populations is vital for understanding the nature of evolutionary processes at the molecular level. PGEToolbox is a Matlab-based open-sourced software package for data analysis in population genetics. The main features of this software are as follows: 1) capability for handling both DNA sequence polymorphisms and single nucleotide polymorphisms (SNPs), which include genotype and haplotype data; 2) exhaustive population genetic analyses and neutrality tests based on the coalescent theory; 3) extendibility and scalability for complex and large genome-wide datasets; 4) simple yet effective graphic user interfaces and sophisticated visualization of data and results. For academic uses, PGEToolbox is available free of charge at http://bioinformatics.org/pgetoolbox. Addins i.e. mStirling.c
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- Gunnels, John; Lee, Jon; Margulies, Susan: Efficient high-precision matrix algebra on parallel architectures for nonlinear combinatorial optimization (2010)