Genetree

GeneTree is a program for comparing gene and species trees usingreconciled trees. The program can compute the cost of embedding a gene tree withina species tree, visually display the location and number of gene duplications andlosses, and search for optimal species trees.

Keywords for this software

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References in zbMATH (referenced in 11 articles , 1 standard article )

Showing results 1 to 11 of 11.
Sorted by year (citations)

  1. Beretta, Stefano; Dondi, Riccardo: Correcting gene trees by leaf insertions: complexity and approximation (2016)
  2. Beretta, Stefano; Castelli, Mauro; Dondi, Riccardo: Correcting gene tree by removal and modification: tractability and approximability (2015)
  3. Blin, Guillaume; Bonizzoni, Paola; Dondi, Riccardo; Rizzi, Romeo; Sikora, Florian: Complexity insights of the minimum duplication problem (2014)
  4. Liu, Liang; Yu, Lili; Pearl, Dennis K.: Maximum tree: a consistent estimator of the species tree (2010)
  5. Wehe, André; Chang, Wen-Chieh; Eulenstein, Oliver; Aluru, Srinivas: A scalable parallelization of the gene duplication problem (2010)
  6. Durand, Dannie; Halldórsson, Bjarni V.; Vernot, Benjamin: A hybrid micro-macroevolutionary approach to gene tree reconstruction (2005)
  7. El-Mabrouk, Nadia: Reconstructing an ancestral genome using minimum segments duplications and reversals. (2002)
  8. Beerli, Peter; Felsenstein, Joseph: Maximum likelihood estimation of a migration matrix and effective population sizes in $n$ subpopulations by using a coalescent approach (2001)
  9. Bahlo, M.; Griffiths, R.C.: Inference from gene trees in a subdivided population (2000)
  10. Ma, Bin; Li, Ming; Zhang, Louxin: From gene trees to species trees (2000)
  11. Page, Roderic D.M.; Cotton, James A.: Genetree: a tool for exploring gene family evolution (2000)