ARTS

ARTS: alignment of RNA tertiary structures, ARTS is a fully automated method for aligning a pair of nucleic acid 3D structures (RNAs or DNAs) and detecting a-priori unknown common substructures. The identified common substructures can be either large global folds containing hundreds and even thousands of nucleotides or small local tertiary motifs with at least two successive base pairs. ARTS is highly-efficient and can be used to search 3D databases given a query structure. Recently, ARTS was used to construct the DARTS classification database of all solved RNA 3D structures.

References in zbMATH (referenced in 6 articles )

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  1. Rahrig, Ryan R.: A new method for RNA 3d structural comparisons using simulated annealing (2015)
  2. Capriotti, Emidio; Martí-Renom, Marc A.: Quantifying the relationship between sequence and three-dimensional structure conservation in RNA (2010) ioport
  3. Kirillova, Svetlana; Tosatto, Silvio C. E.; Carugo, Oliviero: FRASS: the web-server for RNA structural comparison (2010) ioport
  4. Clote, Peter: Introduction to special issue on RNA (2008)
  5. Sarver, Michael; Zirbel, Craig L.; Stombaugh, Jesse; Mokdad, Ali; Leontis, Neocles B.: FR3D: Finding local and composite recurrent structural motifs in RNA 3D structures (2008)
  6. Dror, Oranit; Nussinov, Ruth; Wolfson, Haim J.: The ARTS web server for aligning RNA tertiary structures. (2006) ioport