flowClust

flowClust Bioconductor package: Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: ’consult the README file available in the inst directory of the source distribution for necessary configuration instructions’.

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References in zbMATH (referenced in 22 articles )

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  1. Loos, Carolin; Hasenauer, Jan: Robust calibration of hierarchical population models for heterogeneous cell populations (2020)
  2. Chacón, José E.: Mixture model modal clustering (2019)
  3. del Barrio, E.; Cuesta-Albertos, J. A.; Matrán, C.; Mayo-Íscar, A.: Robust clustering tools based on optimal transportation (2019)
  4. Geissen, Eva-Maria; Hasenauer, Jan; Radde, Nicole E.: Inference of finite mixture models and the effect of binning (2019)
  5. Zhu, Xuwen; Melnykov, Volodymyr: Manly transformation in finite mixture modeling (2018)
  6. Holmström, Lasse; Karttunen, Kyösti; Klemelä, Jussi: Estimation of level set trees using adaptive partitions (2017)
  7. Lin, Lin; Li, Jia: Clustering with hidden Markov model on variable blocks (2017)
  8. O’Hagan, Adrian; Murphy, Thomas Brendan; Gormley, Isobel Claire; McNicholas, Paul D.; Karlis, Dimitris: Clustering with the multivariate normal inverse Gaussian distribution (2016)
  9. Lin, Tsung-I; Ho, Hsiu J.; Lee, Chia-Rong: Flexible mixture modelling using the multivariate skew-(t)-normal distribution (2014)
  10. Lee, Sharon X.; McLachlan, Geoffrey J.: Model-based clustering and classification with non-normal mixture distributions (2013)
  11. Lee, Gyemin; Scott, Clayton: EM algorithms for multivariate Gaussian mixture models with truncated and censored data (2012)
  12. Lo, Kenneth; Gottardo, Raphael: Flexible mixture modeling via the multivariate (t) distribution with the Box-Cox transformation: an alternative to the skew-(t) distribution (2012)
  13. Dabdoub, Shareef; Ray, William C.; Justice, Sheryl S.: FIND: A new software tool and development platform for enhanced multicolor flow analysis (2011) ioport
  14. Bashashati, Ali; Brinkman, Ryan R.: A survey of flow cytometry data analysis methods (2009) ioport
  15. Finak, Greg; Bashashati, Ali; Brinkman, Ryan; Gottardo, Raphaël: Merging mixture components for cell population identification in flow cytometry (2009) ioport
  16. Gosink, John J.; Means, Gary D.; Rees, William A.; Su, Cheng; Rand, Hugh A.: Bridging the divide between manual gating and bioinformatics with the bioconductor package flowflowjo (2009) ioport
  17. Hahne, Florian; Lemeur, Nolwenn; Brinkman, Ryan R.; Ellis, Byron; Haaland, Perry; Sarkar, Deepayan; Spidlen, Josef; Strain, Errol; Gentleman, Robert: Flowcore: a bioconductor package for high throughput flow cytometry (2009) ioport
  18. Lee, Kyongryun; Hahne, Florian; Sarkar, Deepayan; Gentleman, Robert: Iflow: a graphical user interface for flow cytometry tools in bioconductor (2009) ioport
  19. Lo, Kenneth; Hahne, Florian; Brinkman, Ryan R.; Gottardo, Raphael: Flowclust: a bioconductor package for automated gating of flow cytometry data (2009) ioport
  20. Rogers, Wade T.; Holyst, Herbert A.: FlowFP: a bioconductor package for fingerprinting flow cytometric data (2009) ioport

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