fsaLib

fsaLib : finite state automaton Library. fsaLib creates deterministic or probabilistic automata from regular expressions or PSSM (Position Specific Scoring Matrix) and then is able to count occurences whether in renewal or overlapping mode. It’s been designed to be fully operational when processing huge genetic data sets.

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References in zbMATH (referenced in 1 article , 1 standard article )

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  1. Nuel, G.; Delos, V.: Counting regular expressions in degenerated sequences through lazy Markov chain embedding (2016)