R package spaMM. Inference in mixed models, including GLMMs with spatial correlations and models with non-Gaussian random effects (e.g., Beta Binomial, or negative-binomial mixed models). Heteroscedasticity can further be fitted by a linear model. The algorithms are currently various Laplace approximations methods for ML or REML, in particular h-likelihood and penalized-likelihood methods.

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  1. Noh, Maengseok; Lee, Youngjo; Oud, Johan H. L.; Toharudin, Toni: Hierarchical likelihood approach to non-Gaussian factor analysis (2019)