R package EpiModel. Tools for simulating mathematical models of infectious disease. Epidemic model classes include deterministic compartmental models, stochastic agent-based models, and stochastic network models. Network models use the robust statistical methods of exponential-family random graph models (ERGMs) from the Statnet suite of software packages in R. Standard templates for epidemic modeling include SI, SIR, and SIS disease types. EpiModel features an easy API for extending these templates to address novel scientific research aims.

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  1. Stefan Widgren, Pavol Bauer, Stefan Engblom: SimInf: An R package for Data-driven Stochastic Disease Spread Simulations (2016) arXiv