Gimli: open source and high-performance biomedical name recognition. Gimli is a machine learning-based solution for biomedical Named Entity Recognition (NER), which goal is to automatically extract names of biomedical entities from scientific text documents. Currently, Gimli supports the recognition of gene/protein, DNA, RNA, cell line and cell type names. In summary, Gimli receives raw text as input, and provides text with specific annotations as output.