SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes. The SUPERFAMILY annotation is based on a collection of hidden Markov models, which represent structural protein domains at the SCOP superfamily level. A superfamily groups together domains which have an evolutionary relationship. The annotation is produced by scanning protein sequences from over 2,478 completely sequenced genomes against the hidden Markov models.
Keywords for this software
References in zbMATH (referenced in 3 articles )
Showing results 1 to 3 of 3.
- Carugo, Oliviero (ed.); Eisenhaber, Frank (ed.): Data mining techniques for the life sciences (2016)
- De Lima Morais, David A.; Fang, Hai; Rackham, Owen J.L.; Wilson, Derek; Pethica, Ralph; Chothia, Cyrus; Gough, Julian: SUPERFAMILY 1.75 including a domain-centric gene ontology method (2011) ioport
- Wilson, Derek; Pethica, Ralph; Zhou, Yiduo; Talbot, Charles; Vogel, Christine; Madera, Martin; Chothia, Cyrus; Gough, Julian: SUPERFAMILY - sophisticated comparative genomics, data mining, visualization and phylogeny (2009) ioport