ExpEdit

ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments. Summary: ExpEdit is a web application for assessing RNA editing in human at known or user-specified sites supported by transcript data obtained by RNA-Seq experiments. Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions. Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context. Availability: ExpEdit is freely available on the web at http://www.caspur.it/ExpEdit/.


References in zbMATH (referenced in 2 articles )

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  1. Picardi, Ernesto (ed.): RNA bioinformatics (2015)
  2. Picardi, Ernesto; D’antonio, Mattia; Carrabino, Danilo; Castrignanò, Tiziana; Pesole, Graziano: Expedit: a webserver to explore human RNA editing in RNA-seq experiments (2011) ioport