FastAnnotator - an efficient transcript annotation web tool. Recent developments in high-throughput sequencing (HTS) technologies have made it feasible to sequence the complete transcriptomes of non-model organisms or metatranscriptomes from environmental samples. The challenge after generating hundreds of millions of sequences is to annotate these transcripts and classify the transcripts based on their putative functions. Because many biological scientists lack the knowledge to install Linux-based software packages or maintain databases used for transcript annotation, we developed an automatic annotation tool with an easy-to-use interface.
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- Felici, Giovanni; Tripathi, Kumar Parijat; Evangelista, Daniela; Guarracino, Mario Rosario: A mixed integer programming-based global optimization framework for analyzing gene expression data (2017)