compcodeR - an R package for benchmarking differential expression methods for RNA-seq data. Bioconductor: RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods. This package provides extensive functionality for comparing results obtained by different methods for differential expression analysis of RNAseq data. It also contains functions for simulating count data and interfaces to several packages for performing the differential expression analysis.
Keywords for this software
References in zbMATH (referenced in 1 article )
Showing result 1 of 1.
- Bonafede, Elisabetta; Picard, Franck; Robin, Stéphane; Viroli, Cinzia: Modeling overdispersion heterogeneity in differential expression analysis using mixtures (2016)