Cogent: COding GENome reconstruction Tool. Cogent is a tool for reconstructing the coding genome using high-quality full-length transcriptome sequences. It is designed to be used on Iso-Seq data and in cases where there is no reference genome or the ref genome is highly incomplete.

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  1. Sahlin, Kristoffer; Medvedev, Paul: \textitDenovo clustering of long-read transcriptome data using a greedy, quality-value based algorithm (2019)