mrsFAST: a cache-oblivious algorithm for short-read mapping. mrsFAST is designed to map short reads to reference genome assemblies; in a fast and memory-efficient manner. mrsFAST is a cache-oblivous short read mapper that optimizes cache usage to get higher performance. Currently Supported Features: Mismatches, no indels; Paired-end Mapping; Discordant Paired-end Mapping (to be used in conjunction with Variation Hunter); Best Mapping; Limited Mapping; SNP-aware Mapping; Multi-threading.
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References in zbMATH (referenced in 2 articles )
Showing results 1 to 2 of 2.
- Barturen, Guillermo; Oliver, José L.; Hackenberg, Michael: Error correction in methylation profiling from NGS bisulfite protocols (2017)
- Rodríguez-Ezpeleta, Naiara (ed.); Hackenberg, Michael (ed.); Aransay, Ana M. (ed.): Bioinformatics for high throughput sequencing (2012)