miRExpress

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression. Conclusion: We develop miRExpress, which is a database-supported, efficient and flexible tool for detecting miRNA expression profile. The analysis of two Illumina data sets constructed from human and plant demonstrate the effectiveness of miRExpress to obtain miRNA expression profiles and show the usability in finding novel miRNAs.

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References in zbMATH (referenced in 3 articles )

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  1. Rodríguez-Ezpeleta, Naiara (ed.); Hackenberg, Michael (ed.); Aransay, Ana M. (ed.): Bioinformatics for high throughput sequencing (2012)
  2. Liu, Hui; Jiang, Zhichao; Fang, Xiangzhong; Fu, Hanjiang; Zheng, Xiaofei; Cha, Lei; Li, Wuju: Generate gene expression profile from high-throughput sequencing data (2011)
  3. Wang, Wei-Chi; Lin, Feng-Mao; Chang, Wen-Chi; Lin, Kuan-Yu; Huang, Hsien-Da; Lin, Na-Sheng: Mirexpress: analyzing high-throughput sequencing data for profiling microrna expression (2009) ioport