MethPipe

MethPipe: a computational pipeline for analyzing bisulfite sequencing data. The MethPipe software package is a computational pipeline for analyzing bisulfite sequencing data (WGBS and RRBS). The MethPipe software package is a computational pipeline for analyzing bisulfite sequencing data (WGBS and RRBS). MethPipe provides tools for mapping bisulfite sequencing reads and estimating methylation levels at individual cytosine sites. MethPipe also includes tools for identifying higher-level methylation features, including hypo-methylated regions (HMR), partially methylated domains (PMD), hyper-methylated regions (HyperMR), and allele-specific methylated regions (AMR). Go to the MethPipe Homepage.