RapMap is a testing ground for ideas in quasi-mapping and selective alignment. That means that, at this point, it is somewhat experimental. The develop branch will have the latest improvements and additions, but is not guaranteed to be stable between commits. Breaking changes to the master branch will be accompanied by a tag to the version before the breaking change. Currently, RapMap is a stand-alone quasi-mapper that can be used with other tools. It is also being used as part of Salmon and Sailfish. Eventually, the hope is to create and stabilize an API so that it can be used as a library from other tools.
Keywords for this software
References in zbMATH (referenced in 1 article )
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- Gunady, Mohamed K.; Cornwell, Steffen; Mount, Stephen M.; Bravo, Héctor Corrada: Yanagi: transcript segment library construction for RNA-seq quantification (2017)