The JigCell Model Builder and Run Manager. We describe the JigCell Model Builder (JCMB), a tool for creating biochemical reaction network models. JCMB is designed for ease of use and its interface uses the standard spreadsheet metaphor. The JigCell Run Manager (JCRM) is a tool for organizing the large collections of simulation runs typically required by reaction network modeling activities. Availability: JCMB and JCRM are part of the JigCell suite available at http://jigcell.biol.vt.edu

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  1. Aleman-Meza, Boanerges; Yu, Yihai; Schüttler, Heinz-Bernd; Arnold, Jonathan; Taha, Thiab R.: KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks (2009)
  2. Vass, Marc T.; Shaffer, Clifford A.; Ramakrishnan, Naren; Watson, Layne T.; Tyson, John J.: The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models (2006) ioport