TRINITY, a package which enables the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity, developed at the Broad Institute, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes (Source: http://www.psc.edu/)
Keywords for this software
References in zbMATH (referenced in 1 article )
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- Erik Berner Wik; Hampus Olin; Caitlin Vigetun Haughey; Lisa Klasson; Jacques Dainat: GUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read files (2019) not zbMATH