fastDNAml

fastDNAml is a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences. Much of this program is based on version 3.3 of Joseph Felsenstein’s DNAML program (this is to give him credit, not to have you contact him for information on fastDNAml). For Felsenstein’s phylogenetic analysis software, including the latest versions of DNAML, visit the PHYLIP Home Page.


References in zbMATH (referenced in 91 articles , 1 standard article )

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  1. Casanellas, Marta (ed.); Rhodes, John A. (ed.): Preface. Algebraic methods in phylogenetics (2019)
  2. Kosta, Dimitra; Kubjas, Kaie: Maximum likelihood estimation of symmetric group-based models via numerical algebraic geometry (2019)
  3. Long, Colby; Kubatko, Laura: Identifiability and reconstructibility of species phylogenies under a modified coalescent (2019)
  4. Sumner, Jeremy G.; Woodhams, Michael D.: Lie-Markov models derived from finite semigroups (2019)
  5. Warnow, Tandy (ed.): Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret (2019)
  6. Zamudio, Gabriel S.; Prosdocimi, Francisco; Torres de Farias, Sávio; José, Marco V.: A neutral evolution test derived from a theoretical amino acid substitution model (2019)
  7. Bergman, Juraj; Schrempf, Dominik; Kosiol, Carolin; Vogl, Claus: Inference in population genetics using forward and backward, discrete and continuous time processes (2018)
  8. Gross, Elizabeth; Long, Colby: Distinguishing phylogenetic networks (2018)
  9. Bhattacharya, Rabi; Lin, Lizhen: Omnibus CLTs for Fréchet means and nonparametric inference on non-Euclidean spaces (2017)
  10. Handelman, Tomer; Chor, Benny: Cases in which ancestral maximum likelihood will be confusingly misleading (2017)
  11. Roch, Sebastien; Sly, Allan: Phase transition in the sample complexity of likelihood-based phylogeny inference (2017)
  12. Sumner, Jeremy G.: Dimensional reduction for the general Markov model on phylogenetic trees (2017)
  13. Sumner, Jeremy G.; Taylor, Amelia; Holland, Barbara R.; Jarvis, Peter D.: Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants (2017)
  14. Whidden, Chris; Matsen, Frederick A. IV: Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph (2017)
  15. Burden, Conrad J.; Tang, Yurong: An approximate stationary solution for multi-allele neutral diffusion with low mutation rates (2016)
  16. Guindon, Stéphane; Guo, Hongbin; Welch, David: Demographic inference under the coalescent in a spatial continuum (2016)
  17. Hu, Xin-Sheng; Hu, Yang; Chen, Xiaoyang: Testing neutrality at copy-number-variable loci under the finite-allele and finite-site models (2016)
  18. Jarvis, Peter D.; Sumner, Jeremy G.: Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model (2016)
  19. Catanzaro, Daniele; Aringhieri, Roberto; Di Summa, Marco; Pesenti, Raffaele: A branch-price-and-cut algorithm for the minimum evolution problem (2015)
  20. Cybis, Gabriela B.; Sinsheimer, Janet S.; Bedford, Trevor; Mather, Alison E.; Lemey, Philippe; Suchard, Marc A.: Assessing phenotypic correlation through the multivariate phylogenetic latent liability model (2015)

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