fastDNAml

fastDNAml is a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences. Much of this program is based on version 3.3 of Joseph Felsenstein’s DNAML program (this is to give him credit, not to have you contact him for information on fastDNAml). For Felsenstein’s phylogenetic analysis software, including the latest versions of DNAML, visit the PHYLIP Home Page.


References in zbMATH (referenced in 77 articles , 1 standard article )

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  1. Bergman, Juraj; Schrempf, Dominik; Kosiol, Carolin; Vogl, Claus: Inference in population genetics using forward and backward, discrete and continuous time processes (2018)
  2. Gross, Elizabeth; Long, Colby: Distinguishing phylogenetic networks (2018)
  3. Bhattacharya, Rabi; Lin, Lizhen: Omnibus CLTs for Fréchet means and nonparametric inference on non-Euclidean spaces (2017)
  4. Handelman, Tomer; Chor, Benny: Cases in which ancestral maximum likelihood will be confusingly misleading (2017)
  5. Roch, Sebastien; Sly, Allan: Phase transition in the sample complexity of likelihood-based phylogeny inference (2017)
  6. Sumner, Jeremy G.: Dimensional reduction for the general Markov model on phylogenetic trees (2017)
  7. Sumner, Jeremy G.; Taylor, Amelia; Holland, Barbara R.; Jarvis, Peter D.: Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants (2017)
  8. Whidden, Chris; Matsen, Frederick A. IV: Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph (2017)
  9. Burden, Conrad J.; Tang, Yurong: An approximate stationary solution for multi-allele neutral diffusion with low mutation rates (2016)
  10. Guindon, Stéphane; Guo, Hongbin; Welch, David: Demographic inference under the coalescent in a spatial continuum (2016)
  11. Hu, Xin-Sheng; Hu, Yang; Chen, Xiaoyang: Testing neutrality at copy-number-variable loci under the finite-allele and finite-site models (2016)
  12. Jarvis, Peter D.; Sumner, Jeremy G.: Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model (2016)
  13. Catanzaro, Daniele; Aringhieri, Roberto; Di Summa, Marco; Pesenti, Raffaele: A branch-price-and-cut algorithm for the minimum evolution problem (2015)
  14. Cybis, Gabriela B.; Sinsheimer, Janet S.; Bedford, Trevor; Mather, Alison E.; Lemey, Philippe; Suchard, Marc A.: Assessing phenotypic correlation through the multivariate phylogenetic latent liability model (2015)
  15. Fernández-Sánchez, Jesús; Sumner, Jeremy G.; Jarvis, Peter D.; Woodhams, Michael D.: Lie Markov models with purine/pyrimidine symmetry (2015)
  16. Privault, Nicolas; Guindon, Stéphane: Closed form modeling of evolutionary rates by exponential Brownian functionals (2015)
  17. Spade, David A.; Herbei, Radu; Kubatko, Laura S.: Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths (2015)
  18. Kim, Joungyoun; Larget, Bret: Bayesian estimation of the phylogeography of African gorillas with genome-differentiated population trees (2014)
  19. Roychoudhury, Arindam: Identifiability of a coalescent-based population tree model (2014)
  20. Bouchard-C^oté, Alexandre: A note on probabilistic models over strings: the linear algebra approach (2013)

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