fastDNAml is a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences. Much of this program is based on version 3.3 of Joseph Felsenstein’s DNAML program (this is to give him credit, not to have you contact him for information on fastDNAml). For Felsenstein’s phylogenetic analysis software, including the latest versions of DNAML, visit the PHYLIP Home Page.

References in zbMATH (referenced in 53 articles , 1 standard article )

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  1. Jarvis, Peter D.; Sumner, Jeremy G.: Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model (2016)
  2. Fernández-Sánchez, Jesús; Sumner, Jeremy G.; Jarvis, Peter D.; Woodhams, Michael D.: Lie Markov models with purine/pyrimidine symmetry (2015)
  3. Privault, Nicolas; Guindon, Stéphane: Closed form modeling of evolutionary rates by exponential Brownian functionals (2015)
  4. Spade, David A.; Herbei, Radu; Kubatko, Laura S.: Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths (2015)
  5. Bouchard-C^oté, Alexandre: A note on probabilistic models over strings: the linear algebra approach (2013)
  6. Lèbre, Sophie; Michel, Christian J.: A new molecular evolution model for limited insertion independent of substitution (2013)
  7. Zhu, Sha; Steel, Mike: Does random tree puzzle produce Yule-Harding trees in the many-taxon limit? (2013)
  8. Asmussen, Søren; Hobolth, Asger: Markov bridges, bisection and variance reduction (2012)
  9. Lèbre, Sophie; Michel, Christian J.: An evolution model for sequence length based on residue insertion-deletion independent of substitution: an application to the $GC$ content in bacterial genomes (2012)
  10. Pratas, Frederico; Trancoso, Pedro; Sousa, Leonel; Stamatakis, Alexandros; Shi, Guochun; Kindratenko, Volodymyr: Fine-grain parallelism using multi-core, cell/BE, and GPU systems (2012)
  11. Alachiotis, Nikolaos; Stamatakis, Alexandros: A vector-like reconfigurable floating-point unit for the logarithm (2011)
  12. Allman, Elizabeth S.; Degnan, James H.; Rhodes, John A.: Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent (2011)
  13. Cilibrasi, Rudi L.; Vitányi, Paul M.B.: A fast quartet tree heuristic for hierarchical clustering (2011)
  14. Cueto, María Angélica; Matsen, Frederick A.: Polyhedral geometry of phylogenetic rogue taxa (2011)
  15. Sainudiin, Raazesh; Thornton, Kevin; Harlow, Jennifer; Booth, James; Stillman, Michael; Yoshida, Ruriko; Griffiths, Robert; McVean, Gil; Donnelly, Peter: Experiments with the site frequency spectrum (2011)
  16. de Oliveira Martins, Leonardo; Kishino, Hirohisa: Distribution of distances between topologies and its effect on detection of phylogenetic recombination (2010)
  17. Falconnet, Mikael: Phylogenetic distances for neighbour dependent substitution processes (2010)
  18. Ionescu, Tudor B.; Polaillon, Géraldine; Boulanger, Frédéric: Minimum tree cost quartet puzzling (2010)
  19. Joshi, Yadnyesh; Vadhiyar, Sathish: Analysis of DNA sequence transformations on grids (2009)
  20. Mihaescu, Radu; Levy, Dan; Pachter, Lior: Why neighbor-joining works (2009)

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