svmPRAT: SVM-based Protein Residue Annotation Toolkit svmPRAT toolkit is a set of programs that allow building SVM based models for annotating amino acid residues in protein sequences using user supplied features (like PSI-BLAST profiles, or PSIPred profiles). In particular, the toolkit builds features using a window around the residue, and is equipped with a specialized kernel function (normalized second order exponential kernel function nsoe ) along with the standard svm kernel function.
Keywords for this software
References in zbMATH (referenced in 1 article )
Showing result 1 of 1.
- de Brevern, Alexandre G.; Praveen, Joseph Agnel: Species specific amino acid sequence-protein local structure relationships: an analysis in the light of a structural alphabet (2011)