Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis. Quality Control is a fundamental aspect of successful microarray data analysis. Simpleaffy is a BioConductor package that provides access to a variety of QC metrics for assessing the quality of RNA samples and of the intermediate stages of sample preparation and hybridization. Simpleaffy also offers fast implementations of popular algorithms for generating expression summaries and detection calls.

References in zbMATH (referenced in 3 articles )

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  1. Schmidberger, Markus; Vicedo, Esmeralda; Mansmann, Ulrich: Empirical study for the agreement between statistical methods in quality assessment and control of microarray data (2011)
  2. Mao, Linyong; Van Hemert, John L.; Dash, Sudhansu; Dickerson, Julie A.: \textitarabidopsisgeneco-expression network and its functional modules (2009) ioport
  3. Okoniewski, Michal J.; Miller, Crispin J.: Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations (2006) ioport