PHYLIP

PHYLIP is a free package of programs for inferring phylogenies. It is distributed as source code, documentation files, and a number of different types of executables. These Web pages, by Joe Felsenstein of the Department of Genome Sciences and the Department of Biology at the University of Washington, contain information on PHYLIP and ways to transfer the executables, source code and documentation to your computer.


References in zbMATH (referenced in 62 articles )

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  1. Damti, Yanir; Gronau, Ilan; Moran, Shlomo; Yavneh, Irad: Comparing evolutionary distances via adaptive distance functions (2018)
  2. Ferraro Petrillo, Umberto; Guerra, Concettina; Pizzi, Cinzia: A new distributed alignment-free approach to compare whole proteomes (2017)
  3. Jansson, Jesper; Li, Zhaoxian; Sung, Wing-Kin: On finding the Adams consensus tree (2017)
  4. Keith, Jonathan M. (ed.): Bioinformatics. Volume I. Data, sequence analysis, and evolution (2017)
  5. DeGiorgio, Michael; Rosenberg, Noah A.: Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure (2016)
  6. Domenach, Florent; Tayari, Ali: DASACT: a decision aiding software for axiomatic consensus theory (2016)
  7. Mykowiecka, Agnieszka; Górecki, Pawel: Bootstrapping algorithms for gene duplication and speciation events (2016)
  8. Schrempf, Dominik; Minh, Bui Quang; De Maio, Nicola; von Haeseler, Arndt; Kosiol, Carolin: Reversible polymorphism-aware phylogenetic models and their application to tree inference (2016)
  9. Egri-Nagy, Attila; Gebhardt, Volker; Tanaka, Mark M.; Francis, Andrew R.: Group-theoretic models of the inversion process in bacterial genomes (2014)
  10. Gorodkin, Jan (ed.); Ruzzo, Walter L. (ed.): RNA sequence, structure, and function: computational and bioinformatic methods (2014)
  11. Makarenkov, Vladimir; Boc, Alix; Legendre, Pierre: A new algorithm for inferring hybridization events based on the detection of horizontal gene transfers (2014)
  12. Machado, José A. Tenreiro; Lopes, António M.: Analysis and visualization of seismic data using mutual information (2013)
  13. Dai, Qi; Guo, Xiaodong; Li, Lihua: Sequence comparison via polar coordinates representation and curve tree (2012)
  14. Fischer, Mareike: Non-hereditary maximum parsimony trees (2012)
  15. Korenblat, Katerina; Volkovich, Zeev; Bolshoy, Alexander: Robust classifying of prokaryotic genomes (2012)
  16. Paradis, Emmanuel: Analysis of phylogenetics and evolution with R (2012)
  17. Weng, J. F.; Mareels, I.; Thomas, D. A.: Probability Steiner trees and maximum parsimony in phylogenetic analysis (2012)
  18. Blazewicz, Jacek; Formanowicz, Piotr; Kedziora, Pawel; Marciniak, Pawel; Taront, Przemyslaw: Adaptive memory programming: local search parallel algorithms for phylogenetic tree construction (2011)
  19. Cueto, María Angélica; Matsen, Frederick A.: Polyhedral geometry of phylogenetic rogue taxa (2011)
  20. Dai, Qi; Liu, Xiaoqing; Yao, Yuhua; Zhao, Fukun: Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison (2011)

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