PHYLIP

PHYLIP is a free package of programs for inferring phylogenies. It is distributed as source code, documentation files, and a number of different types of executables. These Web pages, by Joe Felsenstein of the Department of Genome Sciences and the Department of Biology at the University of Washington, contain information on PHYLIP and ways to transfer the executables, source code and documentation to your computer.


References in zbMATH (referenced in 96 articles )

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  1. Raynaud, Dominique; Gessner, Samuel; Mota, Bernardo: Andalò di Negro’s \textitDecompositione astrolabii: a critical edition with English translation and notes (2019)
  2. Warnow, Tandy (ed.): Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret (2019)
  3. Damti, Yanir; Gronau, Ilan; Moran, Shlomo; Yavneh, Irad: Comparing evolutionary distances via adaptive distance functions (2018)
  4. Feizabadi, R.; Bagherian, M.; Vaziri, H. R.; Salahi, M.: PULLPRU: a practical approach to estimate phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion (2018)
  5. Brubach, Brian; Ghurye, Jay; Pop, Mihai; Srinivasan, Aravind: Better greedy sequence clustering with fast banded alignment (2017)
  6. Comin, Matteo; Schimd, Michele: Assembly-free techniques for NGS data (2017)
  7. Ferraro Petrillo, Umberto; Guerra, Concettina; Pizzi, Cinzia: A new distributed alignment-free approach to compare whole proteomes (2017)
  8. Jansson, Jesper; Li, Zhaoxian; Sung, Wing-Kin: On finding the Adams consensus tree (2017)
  9. Keith, Jonathan M. (ed.): Bioinformatics. Volume I. Data, sequence analysis, and evolution (2017)
  10. Apostolico, Alberto; Guerra, Concettina; Landau, Gad M.; Pizzi, Cinzia: Sequence similarity measures based on bounded Hamming distance (2016)
  11. DeGiorgio, Michael; Rosenberg, Noah A.: Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure (2016)
  12. Domenach, Florent; Tayari, Ali: DASACT: a decision aiding software for axiomatic consensus theory (2016)
  13. Mykowiecka, Agnieszka; Górecki, Pawel: Bootstrapping algorithms for gene duplication and speciation events (2016)
  14. Schrempf, Dominik; Minh, Bui Quang; De Maio, Nicola; von Haeseler, Arndt; Kosiol, Carolin: Reversible polymorphism-aware phylogenetic models and their application to tree inference (2016)
  15. Erciyes, K.: Distributed and sequential algorithms for bioinformatics (2015)
  16. Egri-Nagy, Attila; Gebhardt, Volker; Tanaka, Mark M.; Francis, Andrew R.: Group-theoretic models of the inversion process in bacterial genomes (2014)
  17. Gorodkin, Jan (ed.); Ruzzo, Walter L. (ed.): RNA sequence, structure, and function: computational and bioinformatic methods (2014)
  18. Gunasinghe, Upuli; Alahakoon, Damminda; Bedingfield, Susan: Extraction of high quality (k)-words for alignment-free sequence comparison (2014)
  19. Makarenkov, Vladimir; Boc, Alix; Legendre, Pierre: A new algorithm for inferring hybridization events based on the detection of horizontal gene transfers (2014)
  20. Tian, Qiang; Shang, Pengjian; Feng, Guochen: Financial time series analysis based on information categorization method (2014)

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