PHYLIP is a free package of programs for inferring phylogenies. It is distributed as source code, documentation files, and a number of different types of executables. These Web pages, by Joe Felsenstein of the Department of Genome Sciences and the Department of Biology at the University of Washington, contain information on PHYLIP and ways to transfer the executables, source code and documentation to your computer.

References in zbMATH (referenced in 49 articles )

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  1. Domenach, Florent; Tayari, Ali: DASACT: a decision aiding software for axiomatic consensus theory (2016)
  2. Mykowiecka, Agnieszka; Górecki, Pawel: Bootstrapping algorithms for gene duplication and speciation events (2016)
  3. Schrempf, Dominik; Minh, Bui Quang; De Maio, Nicola; von Haeseler, Arndt; Kosiol, Carolin: Reversible polymorphism-aware phylogenetic models and their application to tree inference (2016)
  4. Egri-Nagy, Attila; Gebhardt, Volker; Tanaka, Mark M.; Francis, Andrew R.: Group-theoretic models of the inversion process in bacterial genomes (2014)
  5. Gorodkin, Jan (ed.); Ruzzo, Walter L. (ed.): RNA sequence, structure, and function: computational and bioinformatic methods (2014)
  6. Makarenkov, Vladimir; Boc, Alix; Legendre, Pierre: A new algorithm for inferring hybridization events based on the detection of horizontal gene transfers (2014)
  7. Dai, Qi; Guo, Xiaodong; Li, Lihua: Sequence comparison via polar coordinates representation and curve tree (2012)
  8. Fischer, Mareike: Non-hereditary maximum parsimony trees (2012)
  9. Paradis, Emmanuel: Analysis of phylogenetics and evolution with R (2012)
  10. Blazewicz, Jacek; Formanowicz, Piotr; Kedziora, Pawel; Marciniak, Pawel; Taront, Przemyslaw: Adaptive memory programming: local search parallel algorithms for phylogenetic tree construction (2011)
  11. Cueto, María Angélica; Matsen, Frederick A.: Polyhedral geometry of phylogenetic rogue taxa (2011)
  12. Huang, Yujuan; Wang, Tianming: Phylogenetic analysis of DNA sequences with a novel characteristic vector (2011)
  13. Waegeman, Willem; Verwaeren, Jan; Slabbinck, Bram; De Baets, Bernard: Supervised learning algorithms for multi-class classification problems with partial class memberships (2011)
  14. Abu-Asab, Mones S.; Laassri, Majid; Amri, Hakima: Algorithmic assessment of vaccine-induced selective pressure and its implications on future vaccine candidates (2010) ioport
  15. Carmel, Liran; Wolf, Yuri I.; Rogozin, Igor B.; Koonin, Eugene V.: EREM: parameter estimation and ancestral reconstruction by expectation-maximization algorithm for a probabilistic model of genomic binary characters evolution (2010) ioport
  16. Dong, Jianrong; Fernández-Baca, David; McMorris, F.R.; Powers, Robert C.: Majority-rule (+) consensus trees (2010)
  17. Ionescu, Tudor B.; Polaillon, Géraldine; Boulanger, Frédéric: Minimum tree cost quartet puzzling (2010)
  18. Jahn, Katharina; Stoye, Jens: Approximative Gencluster und ihre Anwendung in der komparativen Genomik (2009) ioport
  19. Koban, Evren; Saraç, Çiğdem Gökçek; Açan, Sinan Can; Savolainen, Peter; Togan, İnci: Genetic relationship between Kangal, Akbash and other dog populations (2009)
  20. Mariadassou, M.; Bar-Hen, A.: Concentration inequality for evolutionary trees (2009)

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