MrBayes

MrBayes: Bayesian Inference of Phylogeny. MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters.

Keywords for this software

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References in zbMATH (referenced in 43 articles )

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  1. Allman, Elizabeth S.; Long, Colby; Rhodes, John A.: Species tree inference from genomic sequences using the log-det distance (2019)
  2. Monod, Anthea; Kališnik, Sara; Patiño-Galindo, Juan Ángel; Crawford, Lorin: Tropical sufficient statistics for persistent homology (2019)
  3. Warnow, Tandy (ed.): Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret (2019)
  4. Allman, Elizabeth S.; Degnan, James H.; Rhodes, John A.: Split probabilities and species tree inference under the multispecies coalescent model (2018)
  5. Bouchard-Côté, Alexandre; Vollmer, Sebastian J.; Doucet, Arnaud: The bouncy particle sampler: a nonreversible rejection-free Markov chain Monte Carlo method (2018)
  6. Liu, Yong; Chen, Jingan; Qian, Jieying; Lin, Hao; Sun, Ning; Huang, Zunnan: Evolutionary analysis and structural characterization of \textitAquilariasinensis sesquiterpene synthase in agarwood formation: a computational study (2018)
  7. Stadler, Tanja; Gavryushkina, Alexandra; Warnock, Rachel C. M.; Drummond, Alexei J.; Heath, Tracy A.: The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes (2018)
  8. Venelin Mitov; Tanja Stadler: Parallel likelihood calculation for phylogenetic comparative models: The SPLITT C++ library (2018) not zbMATH
  9. Bordewich, Magnus; Linz, Simone; Semple, Charles: Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks (2017)
  10. Keith, Jonathan M. (ed.): Bioinformatics. Volume I. Data, sequence analysis, and evolution (2017)
  11. Whidden, Chris; Matsen, Frederick A. IV: Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph (2017)
  12. Ioanna Manolopoulou, Axel Hille: BPEC: An R Package for Bayesian Phylogeographic and Ecological Clustering (2016) arXiv
  13. Liers, Frauke; Martin, Alexander; Pape, Susanne: Binary Steiner trees: structural results and an exact solution approach (2016)
  14. Schrempf, Dominik; Minh, Bui Quang; De Maio, Nicola; von Haeseler, Arndt; Kosiol, Carolin: Reversible polymorphism-aware phylogenetic models and their application to tree inference (2016)
  15. Green, Peter J.; Łatuszyński, Krzysztof; Pereyra, Marcelo; Robert, Christian P.: Bayesian computation: a summary of the current state, and samples backwards and forwards (2015)
  16. Kumagai, Seiji; Uyenoyama, Marcy K.: Genealogical histories in structured populations (2015)
  17. RoyChoudhury, Arindam; Willis, Amy; Bunge, John: Consistency of a phylogenetic tree maximum likelihood estimator (2015)
  18. Spade, David A.; Herbei, Radu; Kubatko, Laura S.: Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths (2015)
  19. Heaps, Sarah E.; Nye, Tom M. W.; Boys, Richard J.; Williams, Tom A.; Embley, T. Martin: Bayesian modelling of compositional heterogeneity in molecular phylogenetics (2014)
  20. Loza-Reyes, E.; Hurn, M. A.; Robinson, A.: Classification of molecular sequence data using Bayesian phylogenetic mixture models (2014)

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